RNA id: TU425063


Basic Information

Item Value
RNA id TU425063
length 373
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G308780
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2913905 ~ 2914277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagtttgttTGATGGTGTGCTTGAACCGGGGTTTGAACTCCCAACCTTTGTAACTGCAGACGGGTGTGCTACCACTGCACTACTTAGAGTGTGTGCAGTGGCTTTGGATGAGGGCCTTAAATGTGGCAGTGAAGAAAAAGGGCGGGAAAATCAAACAAAGGATCTGCTGCCACATGGCATGGCTCAAACAAAGGAAATTAAATCAAACTTTAAGGAACTTAGAAAAGACTTCTTGAAAATAAAAACTTCAATAATAAACTGagatcttttctctctcttttgcggcttcttttaagatctctcttttttttgtgagcctttgtttcttttgagatcttttttttgtggcttctttcaatattacttttttttt

Function

GO:

id name namespace
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425041 lncRNA upstream 1655 2864578 ~ 2912250 (+) True G308769
TU425060 lncRNA upstream 12079 2901256 ~ 2901826 (+) True G308777
TU425040 lncRNA upstream 49624 2853499 ~ 2864281 (+) True G308768
TU425001 lncRNA upstream 63238 2764345 ~ 2850667 (+) True G308730
TU424989 lncRNA upstream 180838 2678477 ~ 2733067 (+) True G308719
TU425065 lncRNA downstream 46328 2960605 ~ 2960810 (+) True G308782
XM_022665994.1 mRNA upstream 677022 2221969 ~ 2236883 (+) True eif3m
XM_022665980.1 mRNA upstream 800921 2076601 ~ 2112984 (+) True cstf3
XM_007257769.3 mRNA upstream 1066321 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 1066321 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 1081231 1827904 ~ 1832674 (+) True serp1
XM_022665992.1 mRNA downstream 79791 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 104882 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 155959 3070236 ~ 3107407 (+) True cep126
XM_022665996.1 mRNA downstream 155960 3070237 ~ 3107407 (+) False cep126
XM_022665997.1 mRNA downstream 155960 3070237 ~ 3107407 (+) False cep126
TU424927 other upstream 357336 2556327 ~ 2556569 (+) True G308680
TU424887 other upstream 575739 2319891 ~ 2338166 (+) True G308643
TU424747 other upstream 769942 2131079 ~ 2143963 (+) True G308535
TU424711 other upstream 893774 2017464 ~ 2020131 (+) True G308506
TU424189 other upstream 2727830 185337 ~ 186075 (+) False G308090

Expression Profile