RNA id: TU425065


Basic Information

Item Value
RNA id TU425065
length 206
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G308782
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2960605 ~ 2960810 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttattaatttttcaccaagatcttgcagcagcattgatgatggtagagtctgaccgctgcacaaagcagctcttctccatccagcacatcccaaagattctcaatgaggttaagatctggactctgtggtgaactctctctcaatccatgtgtgaaaatgatgatctcatgctccctgaaccctgaactctttcacaattccagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425063 lncRNA upstream 46328 2913905 ~ 2914277 (+) True G308780
TU425041 lncRNA upstream 48355 2864578 ~ 2912250 (+) True G308769
TU425060 lncRNA upstream 58779 2901256 ~ 2901826 (+) True G308777
TU425040 lncRNA upstream 96324 2853499 ~ 2864281 (+) True G308768
TU425001 lncRNA upstream 109938 2764345 ~ 2850667 (+) True G308730
XM_022665994.1 mRNA upstream 723722 2221969 ~ 2236883 (+) True eif3m
XM_022665980.1 mRNA upstream 847621 2076601 ~ 2112984 (+) True cstf3
XM_007257769.3 mRNA upstream 1113021 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 1113021 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 1127931 1827904 ~ 1832674 (+) True serp1
XM_022665992.1 mRNA downstream 33258 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 58349 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 109426 3070236 ~ 3107407 (+) True cep126
XM_022665996.1 mRNA downstream 109427 3070237 ~ 3107407 (+) False cep126
XM_022665997.1 mRNA downstream 109427 3070237 ~ 3107407 (+) False cep126
TU424927 other upstream 404036 2556327 ~ 2556569 (+) True G308680
TU424887 other upstream 622439 2319891 ~ 2338166 (+) True G308643
TU424747 other upstream 816642 2131079 ~ 2143963 (+) True G308535
TU424711 other upstream 940474 2017464 ~ 2020131 (+) True G308506
TU424189 other upstream 2774530 185337 ~ 186075 (+) False G308090

Expression Profile