RNA id: TCONS_00012295


Basic Information

Item Value
RNA id TCONS_00012295
length 2372
RNA type mRNA
GC content 0.56
exon number 18
gene id XLOC_006301
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51853716 ~ 51881759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GtgtcatttcaaaacaaaaacaaaacaccaaaacacctctgtggtgacccctgatgaataaagagactaagctgaagagaaattaatgaatgagtgatgatgatgatggtgatgatgatgatgatggtggtgtgGGTGTATCAGCGCCCCCTGTCGGCCGGTGGCTGTGCTGTAGCTCCGCCTGTCGGGTCTCCGACTCGCCGCTGCTCCGCCGGTGCTCAGTGAGTGTCGGTGAGAGTgagccggtgagtgtgtgtgtccgcGGGTCTacgccggtgagtgtgtgtgtctgagccgGTGTGTGTTTCCGCGGGTCGGTGATGATGGCGGCGGCGCTGGACAGAGGAGGACAGCGGGTGATCCCGGCAGCGGATCCGGTGTCCGGTGCTCTGCTGTGCGGCTCCGGCTCCACACCCGTCCCGATGAACCTCTTCGCCACCTGGGAGATCGACCGCTCGTCCCCGAGCTGCGTGccgaggctGTGCAGTCTGACGCTGAAGAGGCTGATCGTGTTGAAGGAGCTGGATAAAGATCTGAACTCAGTGCTCATCGCTGTGAAGATTCAGGGCTCCAAACGAGTGCTGCGGTCAAACGAGTATGCTCTTCCTCCCAGTGGTGTGATGGAGACGGAGCTGGAGCTCACCTTCTCTCTGCAGTATCCTCACTTTCTGAAGAGAGACGCCAACCGCCTGCAGATCATGCTCCAGAGAAGGAAACGCTACAAAAACAGAACCATTCTGGGCTACAAGACGCTGGCTGTGGGAGTCATCAACATGGCCGAGGTGCTCCAGCATCCCACAGAGGGAGGTCAGATTCTGCATCTCCACGGCAACATGAAGGATGCTCCGACACGGCTGGCTGAAATCAGTGTGTTCTCACTGTCCAGCCAACCCATAGACCACGAGTACAGCAGCGGCACGGGCGGAGCCGCCATCAAAGCCTCGgatcGTTCTCCTGATATGGATAATTACTCAGAGGATGATGAGGACAGTTATTCATCAGAGCAGGAGGGCAGTGATGATGCTGGACACACACaaGATCTgtatgatgaggatgatgatttaCGAAAGCCCAAAAAACCCCGACGGAAGATGACCAGATCCTTCTCCATGACACGACAGCCCAATTTCAAGCAGAAGTTTGTGGCTTTACTGAAGAGATTCAAGGTGTCAGACGAGGTGCTGGACTCGGACCCGGTGGAGCAGACgcaggaggtggaggaggaggatctGGACCTGCTGTACGACAGTCTGGAGGTGTTCAACCAGAGCGACAGCGGGCCGGAGCTGGAGGACACCGACAGCCTGCTGAGCACACCCAAACCCAAACTCAGGCCGTTCTTCGAGGGCATGTCTCACTCCAGCTCCCAAACCGAGATCAGCAGCGTTCACAGCCAACACACAGCGCTCAACACGGGATGTGACTTCCTGTCAGTGGACCGGAGCAAGAAGACCAGCAGCAGACAGCAGGAGGACAGCAGCATGGAGACCAGCGGCGGGGAGGCTGACGCagagcatcatgggatagcgatGGCGGATGTGTTGGAGAGCAGCAGCGATcgattgaacatctctggaggaAAACTCTGCAAGTCTGAGTCTCAGAACCACAGtaAAGCAGAGGTCAGGGCTCCGCGGCGGATCCGCAGCACCTCCATGAAGGACAGACAGAACTCTCGAGCTCAGAGTGAACGCACCATCAGCATGGACAGTCAATACACACCCCACAGCCGCTTCACTGcacaggttccCAGGAAGTCTGTGTATGACCAGCTGAACCAGATCCTGATCTCAGATGAGAGACTCCCAGAGAACATCATCCTCATCAACACAGTCGACTGGCAgggccagtatgTGGCAGAGATCCTGCAGAAGCACACTCAGCCCATAGTGTCCACCTGCTCTGCTGCTGACGTCCAGGCCGCATTCAACACCATCGTAACACGCATTCAGAGATTCTGTAACTGTAACGCCCAGACTCCGCCCACTGTTAAAGTGGCAGTGACGGGCGATCAGAGCTACCTCAGCACGGTGCTGCGCTTCTTTGTGGAGCAGCTGGCTAACAAGACGCCTGATTGGCTGAGCTACATCCGCTTTCTGATCATCCCCATCGGTTCTCATCCGCTGGCCAAATACATGGCGTCATTCGACAGTAAGTTCAGCAGCATGTTCATGGAGCCATCGTGGAGGGAGCTGTTCTGCCGGCCAGAACCCCCGAACACAGACTCTGTGGATGTAGCTGGACGGATCATCCAGTATCTGGCCGGAGCCAATGTGTGTCACCAGTTCCCCATCTCTGAGGCCATGCTGACCTACAGACAGAAGAGGTACACCTGCGCTCACACACTCCTGCACACACAGTGCTGCCGTTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000175341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013441 lncRNA upstream 58315 51741695 ~ 51795401 (+) False XLOC_006300
TCONS_00013704 lncRNA upstream 79267 51741780 ~ 51774449 (+) True XLOC_006300
TCONS_00013703 lncRNA upstream 79320 51741730 ~ 51774396 (+) False XLOC_006300
TCONS_00013702 lncRNA upstream 86333 51741554 ~ 51767383 (+) False XLOC_006300
TCONS_00013701 lncRNA upstream 228149 51617783 ~ 51625567 (+) True XLOC_006298
TCONS_00013443 lncRNA downstream 239078 52120837 ~ 52136375 (+) True XLOC_006307
TCONS_00013705 lncRNA downstream 288190 52169949 ~ 52173258 (+) False XLOC_006308
TCONS_00013706 lncRNA downstream 288190 52169949 ~ 52173802 (+) False XLOC_006308
TCONS_00013444 lncRNA downstream 290382 52172141 ~ 52174571 (+) False XLOC_006308
TCONS_00013707 lncRNA downstream 290497 52172256 ~ 52174389 (+) True XLOC_006308
TCONS_00012294 mRNA upstream 122418 51710725 ~ 51731298 (+) True XLOC_006299
TCONS_00012293 mRNA upstream 269452 51579851 ~ 51584264 (+) True XLOC_006297
TCONS_00012282 mRNA upstream 831845 50778187 ~ 51021871 (+) True XLOC_006287
TCONS_00012278 mRNA upstream 1475678 50375800 ~ 50378038 (+) True XLOC_006279
TCONS_00012277 mRNA upstream 1480695 50368668 ~ 50373021 (+) True XLOC_006278
TCONS_00012298 mRNA downstream 74638 51956397 ~ 51963460 (+) True XLOC_006302
TCONS_00012299 mRNA downstream 100005 51981764 ~ 51988216 (+) True XLOC_006303
TCONS_00012300 mRNA downstream 124494 52006253 ~ 52017013 (+) True XLOC_006304
TCONS_00012301 mRNA downstream 179275 52061034 ~ 52069970 (+) True XLOC_006305
TCONS_00012302 mRNA downstream 190212 52071971 ~ 52105015 (+) True XLOC_006306
TCONS_00012285 other upstream 750857 51102744 ~ 51102859 (+) True XLOC_006290
TCONS_00012284 other upstream 852538 51001059 ~ 51001178 (+) True XLOC_006289
TCONS_00012283 other upstream 1059844 50793756 ~ 50793872 (+) True XLOC_006288
TCONS_00012281 other upstream 1251002 50602639 ~ 50602714 (+) True XLOC_006286
TCONS_00012280 other upstream 1332116 50520668 ~ 50521600 (+) True XLOC_006285

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_03156666_03178903.mRNA True 3416 mRNA 0.51 23 CI01180000 3155825 ~ 3178903 (-)