RNA id: TCONS_00012298


Basic Information

Item Value
RNA id TCONS_00012298
length 2789
RNA type mRNA
GC content 0.55
exon number 6
gene id XLOC_006302
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51956397 ~ 51963460 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAACGATGGCTGCCGTGGTGAACATGGGGCCAGGGCCGCGTCTGCTGGAGGATTTGCTGCGGGACTCAGAGTGACTGTGCGCGCCTGCAGGAGTGCGGAGGAGCCGCTGATTTCCTGAGTTTCTCCTGCGGTCAAACCGCGCTGAAgctgaGGATGGTGTCTCCTCgtggtgtgtgtttcctcctcttcctcctgctgGGCAGTGTGTTCGGCAGTGTGTTCATGCTGGGTCCGCTGCTGCCGCTGATGCTGCTGTCTCCGTCACGCTACCGCTGGATCACCGACCGCATCGTGGCCACCTGGCTGACCTTACCTGTGGCGCTGCTGGAGCTGGTGTTGGGGGTGAAGGTGGTCGTCACGGGCGACGGGTTTATCCCGGGCGAGCGCAGCGTCATCATCATGAACCACCGCACACGCCTGGACTGGATGTTCCTGTGGTGCTGCTTACTGCGCTACAGCTACCTGCGGCAGGAGAAGATCTGCCTGAAGGCGGCGCTCAAGAGTGTCCCGGGCTTcggctggGCGATGCAGGTCGCCTCCTTCATCTTCATCCAGCGGCGCTGGGAGGACGACCGCACACACATGAGCAACATGCTGCAGTATTTCTGCCGCATCAGAGAGCCGGTGCAGCTGCTGCTGTTCCCTGAGGGCACCGACCTCAccgAGAACACTCGCGCCAGGAGTGACGAGTTTGCGGAGAAGAACGGGCTTCAGAAGTACGAGTATGTGCTGCACCCGCGCACCACCGGCTTCACCTTCATCGTGGACACACTGCGCGGAGggGATAATCTGGATGCGGTTCATGACATCACAGTGGCGTATCCTCAGAATATCCCGCAGAcggagcgccacctgctggcggGTGTGTTCCCGCGCGAGATACACTTCCACGTGCAGCGCTTCACGGTGGCGTCTGTGCCCGCGGGCGCCGCCGGTCTGCAGGCGTGGTGTCAGGAGCGCTGGCGGGAGAAGGAGCGGCGGCTGCAGCGCTTCTATGAGACGGTCCCGCGCCGCTTCGATGCgcccgctgtgggtgtgtgtgtgcgtgagccgTGCTGTCAGAgcgggcagtgtgtgtgtgtgccgcgCTGTAAGAGCGAGGGGCGTGTGCGCATCATCCTGGTGGCGTCGCTGCTCTACTGGAGCGTCTTCATCACCGCCGCCTGCGCCAGCCTCTGCCTCTGCCCCCCCGCACAATTCTACTTCCTGTTCATGGTCGTCTTCTTCCTGTGTCAGCAGCGGTTCACCGGCGGCCTGGAGCTGATGGAGCTGGCCTGCCACCGATACTGGAGCCGCCGCAGCGCCGACAAGCAGgagtgaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcatgacaGTGTATAGGTTATTGAATGTGTGTATAACTgatgcataagtgtgtgtgtgtataaatgatgaatgagtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagctgctgctcctcctgcTGGCTGAGAGGCTGAAGTGCAGCACAACAGACACTCATATAAACAGAACAGCAGCTCTTCATCCTCCACTCTTCATCCTCGCGGTGACCTTTGACTGTCAGCTGTAGAGGACAGCGGTGGACACtgatgtgacacacacacacacacacacacacatttacttgaTCAACACTTGCTCTTTAAAGCTGCAGATAATGAAGAGCTCagaggaggtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtttggactcCTCTGAGCTGAGTACTGTTCTCTGCAGCGCACCCCAGCGCttcactcctcctcctcctcctcctcctcctcctctgtgtgtgtgtgcgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtggtgGTGTGTCGGCTGGTGTGTGTAGTCCTGCAGTATACTCGGGTGTTTTAGACGATCCTCTTTTATTATGGGCTGTGTCTGTCTGTTATTATTAGTGTTTTAGTTGAGGATCACAGCCATAGCGGACGCGCACACTGCTCATGGAGAACAGTGTGGGGAAGACATGCACATcatgtagagtgtgtgtgtgtgtgtgtgtgtgtgtttgtttatttgtatgtatgtgtgtgtgtgcaatgtgACAATCCTCATGTAAATGAATCAGGGCAGTCGCTGGCTCAACATTACACTGCATTATGGGAGGATTAGAGTGTGttctgacctttgacctcttGTCTTTCCTCACTGATGCCCATTATTGTTTTAAGTAACACACAgatggagaacacacacacacacacacacacacacacacctgtatcagTCATCAGCACATGTAACACCAGTACACAGTGTTCTGCACTGAGAGTGTTTattctgtgtgtgttgtgttgatgagtgattgcagtgtgtgtgtgtgtgtgtgtgtttctgttttcctcctatgtgtgtgtgttgttcagcTGTGGTGTTCTGACCTCTCTGGGTCGCAGTGGGCTGGTTTATACTGTGTGTTGAAGAGGAAGATGGAGAAGCACAGAAACACCTTCATCATCAGGAGATCAGCCTCTGATCAGTCAATCAATAATCAATACTCTCTCTCCACACCTCTGCTGTGTCCTCTGCAGTCTGTGTGTGTCCGTCTGTCCTCATCTGGCCGCATTTGTCATCTTGAGTATGTATTTTTCTGATGTATAGTATGATGAATGAGTCCAGAATAAACAGGCCTGGCGTTA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0036149 phosphatidylinositol acyl-chain remodeling biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0001885 endothelial cell development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016024 CDP-diacylglycerol biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko00564 Glycerophospholipid metabolism
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-081211-2 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Acts upstream of or within endothelial cell development and hemangioblast cell differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hematopoietic stem cell. Orthologous to human LCLAT1 (lysocardiolipin acyltransferase 1).

Ensembl:

ensembl_id ENSDART00000161098

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013442 lncRNA upstream 90887 51853802 ~ 51865510 (+) False XLOC_006301
TCONS_00013441 lncRNA upstream 160996 51741695 ~ 51795401 (+) False XLOC_006300
TCONS_00013704 lncRNA upstream 181948 51741780 ~ 51774449 (+) True XLOC_006300
TCONS_00013703 lncRNA upstream 182001 51741730 ~ 51774396 (+) False XLOC_006300
TCONS_00013702 lncRNA upstream 189014 51741554 ~ 51767383 (+) False XLOC_006300
TCONS_00013443 lncRNA downstream 157377 52120837 ~ 52136375 (+) True XLOC_006307
TCONS_00013705 lncRNA downstream 206489 52169949 ~ 52173258 (+) False XLOC_006308
TCONS_00013706 lncRNA downstream 206489 52169949 ~ 52173802 (+) False XLOC_006308
TCONS_00013444 lncRNA downstream 208681 52172141 ~ 52174571 (+) False XLOC_006308
TCONS_00013707 lncRNA downstream 208796 52172256 ~ 52174389 (+) True XLOC_006308
TCONS_00012296 mRNA upstream 74638 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012295 mRNA upstream 74638 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012297 mRNA upstream 75386 51869025 ~ 51881011 (+) True XLOC_006301
TCONS_00012294 mRNA upstream 225099 51710725 ~ 51731298 (+) True XLOC_006299
TCONS_00012293 mRNA upstream 372133 51579851 ~ 51584264 (+) True XLOC_006297
TCONS_00012299 mRNA downstream 18304 51981764 ~ 51988216 (+) True XLOC_006303
TCONS_00012300 mRNA downstream 42793 52006253 ~ 52017013 (+) True XLOC_006304
TCONS_00012301 mRNA downstream 97574 52061034 ~ 52069970 (+) True XLOC_006305
TCONS_00012302 mRNA downstream 108511 52071971 ~ 52105015 (+) True XLOC_006306
TCONS_00012285 other upstream 853538 51102744 ~ 51102859 (+) True XLOC_006290
TCONS_00012284 other upstream 955219 51001059 ~ 51001178 (+) True XLOC_006289
TCONS_00012283 other upstream 1162525 50793756 ~ 50793872 (+) True XLOC_006288
TCONS_00012281 other upstream 1353683 50602639 ~ 50602714 (+) True XLOC_006286
TCONS_00012280 other upstream 1434797 50520668 ~ 50521600 (+) True XLOC_006285

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_03223456_03224643.mRNA True 724 mRNA 0.55 4 CI01180000 3223402 ~ 3224643 (+)
bowfin (Amia calva) AMCG00004058 True 1218 mRNA 0.62 5 CM030121.1 30924788 ~ 30928491 (+)