RNA id: TCONS_00013444


Basic Information

Item Value
RNA id TCONS_00013444
length 1363
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_006308
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 52169949 ~ 52174571 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATTAGCTGTATTCTTTATGATTCTTTTCCATGGTTTTGGACACTGGTATTCCCGGTTCCGCCAGCGGGATGCAGCACTGCACCGGTTTTTACCCAACTGAGGCTGCTGAAACCGGAAGCTctggaaaaagaaagagaaatagagaaacggagagagggagggagagagagaggtagAAGAAGGGAGCGGGGCGTCTGAGCCCGGGAGAGagtgaccgaccgaccgacccgCCGCTGTTCCTTCAGTCGCTTCTTTGATCCGCGAACAAACACCGGACACACACCGACACACCTGCCGCTCACCGCCGACACACACACCGCGGTGGAGCAGGAGGATATCAGACACATTTACACGCTCTTACTGGGCGGATAGCGGCACCTGAGCGTCCCCGGAAAACATGGACGGATCACCGCGGTGCGACACCGAGAGGAGCGCCGGTCCCCGCGGAAGGAGACGGAGATCCAGCGCGCTGCTGGCCGCCCTGACCCTCTGCTCCAGAGTCAGATGGTGTGGAGCGCTCATCTCTGCATGTTTACCACACCGTCAGTCTGTCTGCTGGTGGAGCGGGATATTTCTCCATGACAGAGAAACAGATGGAGCTGTGGAGGAAAAGCTGTCCGTTTCCCACAGCCGTGATGATCAATATGCAGAAATCACAGAGCGTCAGGAATCTTTTAGAAAACTGTGAAGTGGGAATCCTCCTCCATCAAGAGCTGagtttttatttaaagatgtgagctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaacagCTCTTGATTGGCAGAAAGCGTCCGCTGTGTCAGCAGTTGTGGGCTTGTGGGATTAACATGTTTGACAAGCAGGAATTGGATTATCATGATCCGCCGTCAGCTCTCTGACAGACGATGTGCTGAATGACTTTTCCATCATATTTCAGTGGGAAACGGGAAGCGTTCATTCACACAGAAAGGAAAATCAGCCGCTGATTCACTCTCTCAAAGCATTCAGTGAGCGTTATTTACACAAATCTCCTACACTAAACCCTTTCTCCTCTCACTTCCCAACAGTTCAAAATAAGCCTGTCATAATGACACTTGTACATCATCATCTACTCTGAATTGTAAAATACTttcatatgtacagtatatataaaacatCATCATTTCTATTGCTTATTTTACACTAAATGTCCTTCTGTCATCTTTTGttgatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgcatgtgtgcgcgtgtgtgtgtgtgtgtgtgcacgcatgtaCAATGAGCTTCTGAAATCtactaaatgaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013443 lncRNA upstream 35766 52120837 ~ 52136375 (+) True XLOC_006307
TCONS_00013442 lncRNA upstream 306631 51853802 ~ 51865510 (+) False XLOC_006301
TCONS_00013441 lncRNA upstream 376740 51741695 ~ 51795401 (+) False XLOC_006300
TCONS_00012302 mRNA upstream 67126 52071971 ~ 52105015 (+) True XLOC_006306
TCONS_00012301 mRNA upstream 102171 52061034 ~ 52069970 (+) True XLOC_006305
TCONS_00012300 mRNA upstream 155128 52006253 ~ 52017013 (+) True XLOC_006304
TCONS_00012299 mRNA upstream 183925 51981764 ~ 51988216 (+) True XLOC_006303
TCONS_00012298 mRNA upstream 208681 51956397 ~ 51963460 (+) True XLOC_006302
TCONS_00012285 other upstream 1069282 51102744 ~ 51102859 (+) True XLOC_006290
TCONS_00012284 other upstream 1170963 51001059 ~ 51001178 (+) True XLOC_006289
TCONS_00012283 other upstream 1378269 50793756 ~ 50793872 (+) True XLOC_006288
TCONS_00012281 other upstream 1569427 50602639 ~ 50602714 (+) True XLOC_006286
TCONS_00012280 other upstream 1650541 50520668 ~ 50521600 (+) True XLOC_006285

Expression Profile

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