RNA id: CI01000001_05945762_05955388.mRNA


Basic Information

Item Value
RNA id CI01000001_05945762_05955388.mRNA
length 1938
RNA type mRNA
GC content 0.42
exon number 12
gene id CI01000001_05945762_05955388
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5945336 ~ 5955388 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGGAGAACCGAGCTCTCAATGAATCAGAAAAGGCTCTTGCCACAGGGAACGGACAGCGTCCCTTCAACATGAATCATTACGCTACTAAAAAGAGTGCAGCGCAGAGCATGTTGGATGTGGCTCTTCTGATGGCCAACTCCTCTCAGCTGAAGACAGTGCTGCATTCAGGACCTCAGCATCGCTTCTACGCCCCTCTTATTGCTCTGATCTCACTGTCCATCTCACTGCAGGTCATTGTTGGCCTCCTACTCATCTTCATTGTGAAGTATGACCTGAACGATGTTAAGAAACAGCCGAGGCTGAACACAATGAATGATGCAGCAACTATTTTTGTGTTCTTTACTGTTCTTATTAACGTCTTCATCACAGCATTGGGATTTGAAACTGGAGGGGAGAAGCTTTCCAAAATCAAAGCAGCTCAGAATGAGGATTTAATCCAGCAACTCACACGGTTTGGTAATGAAATGATGTTATGTAAAGCTAATGACCAGGATTTAATCAAGGGTCTTGCACCACCGTTACAGCAGCTGGTGTTTCTAGAGCAGCTTCTAATGGTTATTCAAGCAGACTCCTCCATACACTCTAGACAGAAGTCATCCTCTGGAGATGACCGTGTGAAGAACGATGATCTTCTTGGTGAGCTGATGTTTCAGGATAACTTATCTGACCTGGATATGCTCCTGAACCCAACCTGCAACCCGTGGTCCGCACATATCCGTGAACATCTGATACGCACGCAGTCGGCTCATAACAAAATGAACGGGAACCACAGTAAACCCAGTGATTTAATAAACAGGAGTGAACATTCCCGACATGGAAGTCATGGAGAAGAAAGCCTGTCAGAGGCCAAAGCGCTGCTGCAGTCTACCCAGAGCACATTAGGGGAGCTCCACAAAGAGTGTGAGTTCCTGCAGTCAGATTCGTCAGGTTCTGCAGCTGTGCTGTCCCCCTGTATGCTGAAAGTGGCCATCTCGGACATGTCTCAGCTTATGACGGCCTTCGGACACATCTACAATACTGACTTTAAAGGGTACTGCCAGAGAACCCCTCCGCCCCTCAGTTCCGGCACTAGTGTGTTTCAATCTGTACATCAGCTTCTCCAAATCTGTAATACGGCTCATGCCACAGGGAACGGACAGCGTCCCTTCAACATGAATCATTACACTACTAAGAAGAGTGCAGCGCAGAGCATGTTGGATGTGGCTCTTCTGATGGCCAACTCCTCTCAGCTGAAGACAGTGCTGCATTCAGGACCTCAGCATCGCTTCTACGCCCCTCTTATTGCTCTGATCTCACTTTCCATCTCACTGCAGGTCATTGTTGGCCTCCTACTCATCTTCATTGTGAAGTATGACCTAAACGATGTTAAGAAACAGCCGAGGCTGAACACAATGAATAATATGGCCACTGTTTTTGTGTTCTTTACTGTTCTTATCAACATCATCATCACAGTGTTGGGATTTGAGTCTGAAGGACTTTTAGACCAGTTAGCAGAAAATGCAGTTTAAAAGAGTATGCAGGAAATTTGAGTTAAATTGTAATGTTTTCATAAAATAGAACTTATAATCTTGAGTATTTTTATCGAGATATCTATACTTTATTATTTACATTAATGCACATACTGTACTGACTTTACATCTCTTCTGTTTTAGAAACAGCATCTGATACTGCACTCCCTCCGAATAATACACAAGAATTCCTCATGTGATTGTATTTACACATTTTTTTAAATTTACTGTACATTTACCTGAGTTGCCTCCATTTACTGTAATCAAAATCTAACCTAATCTTTTTTTCTGCCATTTTTTTATTTTTATTTGTATACCTTCATTTAACAAAGCATTAATGTTTGAGCAAATGTGTAATTTGATGTTTTGTGACAAACTGAATTTTCTAATATGAATTCACTTAATTATCAGCAGTCAAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18423 lncRNA downstream 5792 5924884 ~ 5939544 (-) True G16446
TU18560 lncRNA downstream 115680 5829347 ~ 5829656 (-) True G16573
TU18543 lncRNA downstream 225660 5719395 ~ 5719676 (-) True G16556
TU18542 lncRNA downstream 228308 5716823 ~ 5717028 (-) True G16555
TU18540 lncRNA downstream 255283 5689665 ~ 5690053 (-) True G16553
TU18606 lncRNA upstream 167689 6123077 ~ 6124878 (-) True G16613
TU18644 lncRNA upstream 312594 6267982 ~ 6268417 (-) True G16640
TU18654 lncRNA upstream 313687 6269075 ~ 6270348 (-) True G16650
TU18657 lncRNA upstream 328804 6284192 ~ 6284465 (-) False CI01000001_06285353_06286524
TU18658 lncRNA upstream 330523 6285911 ~ 6286155 (-) True CI01000001_06285353_06286524
CI01000001_05848734_05855468.mRNA mRNA downstream 89531 5848633 ~ 5855805 (-) True CI01000001_05848734_05855468
CI01000001_05760403_05789161.mRNA mRNA downstream 156175 5760318 ~ 5789161 (-) True CI01000001_05760403_05789161
CI01000001_05753118_05757768.mRNA mRNA downstream 186934 5753031 ~ 5758402 (-) True CI01000001_05753118_05757768
CI01000001_05738554_05751605.mRNA mRNA downstream 193731 5738127 ~ 5751605 (-) True CI01000001_05738554_05751605
CI01000001_05710029_05712242.mRNA mRNA downstream 232826 5709920 ~ 5712510 (-) True CI01000001_05710029_05712242
CI01000001_05969709_06015943.mRNA mRNA upstream 14040 5969428 ~ 6016133 (-) True CI01000001_05969709_06015943
CI01000001_06037150_06039894.mRNA mRNA upstream 81745 6037133 ~ 6039894 (-) True CI01000001_06037150_06039894
CI01000001_06044481_06052838.mRNA mRNA upstream 88121 6043509 ~ 6054128 (-) True CI01000001_06044481_06052838
CI01000001_06071846_06084571.mRNA mRNA upstream 116283 6071671 ~ 6085181 (-) True CI01000001_06071846_06084571
CI01000001_06104303_06118257.mRNA mRNA upstream 148706 6104094 ~ 6118421 (-) True CI01000001_06104303_06118257
TU18440 other downstream 715751 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 987494 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 1143941 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 1217129 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 388716 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 629092 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 882137 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 980689 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1295923 7251311 ~ 7253254 (-) False G17911

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044015 False 3539 mRNA 0.38 10 NC_007134.7 19823298 ~ 19831739 (-)