RNA id: CI01000001_05710029_05712242.mRNA


Basic Information

Item Value
RNA id CI01000001_05710029_05712242.mRNA
length 974
RNA type mRNA
GC content 0.56
exon number 2
gene id CI01000001_05710029_05712242
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5709920 ~ 5712510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGACAAAAATGAATAAATCATCAAGAGGGAGTGAGGGCTAGTTCTTCACAGACAGCGCTTAAGGAAACGCTCTCCCCCCCGCCCCCACCTGCCGGCTCTGAGCGTGCGAGAGCTAGAACTGAGGTCTCTGGCAGACTGACAGTTGCAGCCTCTCCTGCTCTCTAGCCTGGCGTTTTGTTGATGCATTTGCCTTGATTTTCACGTTCCTCTGCCCTCCCTCTCCGTGCCCGTGTCATGCTCTGTTGCCGGCGTGCCGTCCTGGAGCCATGCCCATCCCAGAGATGGCTTTGAGCCCGGTGAAGTCTCTGTACTGGGAGGTGTTCCCCTCCATGGCCATGCAGCGGGTGTACTGCACGCCCGTGCTCTGGGCCGGGCGTCTCTATGTGCTGGGGGGCTGCAGCGAGAACGGCCTCCCTTTGGACTCCGCCGAGGTGCTGGATCTGGAGAGCCAGCGCTGGTGCGAGCTGCCCCCTCTCCCCACTGCTCGGGCCGGGGCATCCGCCGTGGCCGTCGGAGACCAGCTGATGGTCATGGGAGGCATGGATGCGCAGCAGAGCCCACTGGCCTCGGTGGAGGTGTATCACCCTGACGAGGGCAAGTGGGAGAGGAAGACGGGACTGGGGCAGCCCTCCATGGGCATCACCACGCTGGAGAAAGGTGTTTGTTCAGGTGACAGTTTATCTAGTTTGAGACCCCGAGGAAGAGTGTTTATTCACAGGGATTCACTTCTGCTAAGCCACATTGCACCAGCTGAGCTGCATTCAGGCCGGGACAGATCTGTCTGTGGGTCCATGTTAAAACTATCAGCAAGACCTGTGTGGATTCATATGCAGGAGAGAGATCATGAACCTGTGGCTTTTTAAACAATACTTCAGTTAGCCTACAGAATTATAAATGATCTTCTCATTTACATAGAGCAGCAGAGCCTTTGAAATTAGCATGTGAGTTGTGGGCTAGACATTTGCCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18540 lncRNA downstream 19867 5689665 ~ 5690053 (-) True G16553
TU18539 lncRNA downstream 20456 5688799 ~ 5689464 (-) True G16552
TU18536 lncRNA downstream 62626 5646954 ~ 5647294 (-) True G16549
TU18531 lncRNA downstream 79923 5629743 ~ 5629997 (-) True G16547
TU18529 lncRNA downstream 80842 5628786 ~ 5629078 (-) True G16545
TU18542 lncRNA upstream 4313 5716823 ~ 5717028 (-) True G16555
TU18543 lncRNA upstream 6885 5719395 ~ 5719676 (-) True G16556
TU18560 lncRNA upstream 116837 5829347 ~ 5829656 (-) True G16573
TU18423 lncRNA upstream 212374 5924884 ~ 5939544 (-) True G16446
TU18606 lncRNA upstream 410567 6123077 ~ 6124878 (-) True G16613
CI01000001_05613623_05676716.mRNA mRNA downstream 32473 5612818 ~ 5677447 (-) True CI01000001_05613623_05676716
CI01000001_05599133_05600420.mRNA mRNA downstream 108180 5598777 ~ 5601740 (-) True CI01000001_05599133_05600420
CI01000001_05594766_05595939.mRNA mRNA downstream 113981 5594604 ~ 5595939 (-) True CI01000001_05594766_05595939
CI01000001_05575469_05577709.mRNA mRNA downstream 132211 5574930 ~ 5577709 (-) True CI01000001_05575469_05577709
CI01000001_05544032_05558747.mRNA mRNA downstream 151173 5543414 ~ 5558747 (-) True CI01000001_05544032_05558747
CI01000001_05738554_05751605.mRNA mRNA upstream 25617 5738127 ~ 5751605 (-) True CI01000001_05738554_05751605
CI01000001_05753118_05757768.mRNA mRNA upstream 40521 5753031 ~ 5758402 (-) True CI01000001_05753118_05757768
CI01000001_05760403_05789161.mRNA mRNA upstream 47808 5760318 ~ 5789161 (-) True CI01000001_05760403_05789161
CI01000001_05848734_05855468.mRNA mRNA upstream 136123 5848633 ~ 5855805 (-) True CI01000001_05848734_05855468
CI01000001_05945762_05955388.mRNA mRNA upstream 232826 5945336 ~ 5955388 (-) True CI01000001_05945762_05955388
TU18440 other downstream 480335 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 752078 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 908525 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 981713 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 631594 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 871970 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1125015 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1223567 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1538801 7251311 ~ 7253254 (-) False G17911

Expression Profile