RNA id: CI01000001_05613623_05676716.mRNA


Basic Information

Item Value
RNA id CI01000001_05613623_05676716.mRNA
length 2781
RNA type mRNA
GC content 0.45
exon number 10
gene id CI01000001_05613623_05676716
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5612818 ~ 5677447 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTTACTTATTTTTAAATTGTGCATGGTTAACAAACATTTTGCACATTATTAAATTGGGAATATTCTTGCAACACCGAAACACTACAAATTTGAACGGTTGGAACTCAAAATTGTCTGGGATAGATGAGCTGTCTCTTTAAGAGTGTAGACAAGATAGCTGATTATTGTGAAATTGCCCTACAACGTCCAATAGTGTGACTAGTCATGTCGGTTCCAGTGTTGTGATTCTGGTTCTGTGGCTCTCAGGCTCCGAGTCACTTGAGATTTAGCCTGGCATCCTGTATGGCCAGTTCTGAGCATGTGCCAAATTTTTGCTGATTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCCTTAGCAGTAATAATTGTGTTGGGTTCAGGCCAAATGTAACCAGACAGACTCTTTAAGCGCTGTTCAGCACCAACCCCATTAAGACAGCTGCCTGAACAAGGCTACTTTCCCCTGCCTCTTTTTCAGTGCGATTTAAAGCTTTGGTCACAGCACAGCGTTGCACGTTTGTTGTAATATATGCTGCTAGTCACCCATGCAGGGCAAGCCACTGCTTGTGTGGACTTTTAGTTTAATTATTTCCACTTGATTTTAGTTATTTATTACTTACCCAAATGCATCGGATTGATTCCCTACTGTATTCCAATTTCTTTCTCCCATTGCTCCTTGTCTTCAAAGATAACAGACAGGATTTTCTCTGTTGTTCCAAATGAGGGATGAATTTGACAGTCCATTTAATGGCTTACTTTCTGTCCTTTGCTTTAATGCAGTGCCAGATGGCAAGGTGTATGCATTGGGCGGGATGGGAGCTGACACGACCCCTCAGGCCTTGGTGAGGCTGTATGAGCCGACAAAAGACCAATGGCTGCCCCTCACCTCCATGCCCACACCCCGCTATGGAGCCTTCTCCTTCCTGCGCGGTAACAAGATCTATGTTCTGGGTGGGCGTCAAGGCAAATTGCCAGTGACCGCATTTGAGGCCTTCGACCTTGAGATGAAGAGCTGGACTCGGTACCCGTGCATCCCCAGCCGCAGAGCGTTCTCCTCATGCGCGGCCAGTGACAGGGCGTTTTTCAGCCTGGGCGGCCTCCAGCAACCTGGACCCCACAACTTTTACTCCAGACCTCACTTCGTTTCCACTGTAGAGGAATTTGATTGTGAGCAAGTTGGGCTTCAATCTCTTCAGCCTCGCTATGTGGCGGGCAGGAGAAAGATTGATGTGTTGTTGTGTTCACTACATAAAAGCACACATCCTCTCACATTCACTCTGAACACAGACTCATTACCTCAGCCGCTGTGTGCTGTGCCGTACAGGCGGTGTGTTCATTCATTAGGCGTGACGGCTGCTATTGTCAGGTTGTGTTTTCGGGGCTTTTTGTACATGAATGAGTGTGGCGTTAGCAACAATGCTGGATCCCTCATCCTTATTCACAGTAACAGCATGCAGAAATGGCTTGTGTGCACCACCAACGCAGGATTTAATACAAACTTCCTCCCTAAAGGTTTTAAGAACTGTCAATCATGCAACACCTCCTGCTCTTTAGCTACAGAGAGAAGCGCAGCTGTGTGCATGTCGGGTTCAATAGCAAGCGACAGCTCTCGAAATGAAGAGTACATGATGCTGTACAACATACTTGCTCCTGTAATAGTGTACAGTGTGTGGTTGAAGGCCACGCGGAGCTGTCGCATGAGAGAGAAGCGGGCGGACTTTGTAGCCGGCTGTCTCGGTGGACGGGTCATCGCTGCGGGGGGACTCGGTAACCAGCCGTCCCCGCTGGCGTCAGTGGAGAGTTATAACCAGCTGAAGAGGAGATGGGAACCCGTGGCCCCGTTACCCAGCCCTCGCTGCTCCTGTGCCTCCATTCAGACCCCCAACATGCTGTTCCTCATCGGAGGGGTGTCCCAAGGTCCCAGCAATGCTGTGGAAGCCCTCTGTTTGAAAGAGACCGTCTGACACACACATACACACACACACTAATGGACAACTATAACAAATCCTCACATGCTGTACTTTCCAGAGTGTAGGCTCTGCAAACACACACACACATACTGACGTCAAGTTGACGCGTGTGTCTCTGACAAATATTCACAGACTTTCCCCGCAGAGGACGCATCAGCTTTATACTTTGAATAGTGGAGACAATCTACTGGAGCTTGGACAGCGTTCCACACCTCTGGACAAAAGAGTTTTGGACTGGAGATCTAAGACAAGCAAAAAATACACAAGTATATTAATTGATTGAACAATATTCATATATATATATATATATATATATATATATTAATATATTGTTATAATAAATATATATCATATTTATTAACATATAGAATAACAAAAAACAAATATATATAGATATAGATATATATAGATGTGCAGACCTATACAGACAGGCACACGCAACAGTCCAGGCGCCTTTGAACTGTACAGCATTTTCAGTATAAAAGCAGGGTAATTTTCTGGCAAACTAAAGAGGAACTTAGGGCCATATCCACCACGCTGCCACAGCACCCGTCTGAGGTAGCATGTTTAGCACTTTTTGTACTATTGACAAACAGAGAATCTTCTGCGCGAGACTTCAGAAGTGGGAGGCGGATGCGTGTACGTGTGTGTTTTTGTACCTTCACAGCCATGAACGTGTGAAATAGAGCATTGTTATGAGTGGAAAGAGCAACTTATAATGGCAAATCACTGATGCCTCACTGTAGCATGAGACAGGGGAGAAGGATGACAATGTGGTTAATCTTGCTGGTTAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18521 lncRNA downstream 10213 5602316 ~ 5602605 (-) True G16537
TU18520 lncRNA downstream 15015 5597463 ~ 5597803 (-) True G16536
TU18515 lncRNA downstream 25464 5587079 ~ 5587354 (-) True G16531
TU18506 lncRNA downstream 39815 5572583 ~ 5573003 (-) True G16524
TU18500 lncRNA downstream 144354 5468118 ~ 5468464 (-) True G16518
TU18539 lncRNA upstream 11352 5688799 ~ 5689464 (-) True G16552
TU18540 lncRNA upstream 12218 5689665 ~ 5690053 (-) True G16553
TU18542 lncRNA upstream 39376 5716823 ~ 5717028 (-) True G16555
TU18543 lncRNA upstream 41948 5719395 ~ 5719676 (-) True G16556
TU18560 lncRNA upstream 151900 5829347 ~ 5829656 (-) True G16573
CI01000001_05599133_05600420.mRNA mRNA downstream 11078 5598777 ~ 5601740 (-) True CI01000001_05599133_05600420
CI01000001_05594766_05595939.mRNA mRNA downstream 16879 5594604 ~ 5595939 (-) True CI01000001_05594766_05595939
CI01000001_05575469_05577709.mRNA mRNA downstream 35109 5574930 ~ 5577709 (-) True CI01000001_05575469_05577709
CI01000001_05544032_05558747.mRNA mRNA downstream 54071 5543414 ~ 5558747 (-) True CI01000001_05544032_05558747
CI01000001_05509301_05539080.mRNA mRNA downstream 72260 5507976 ~ 5540558 (-) True CI01000001_05509301_05539080
CI01000001_05710029_05712242.mRNA mRNA upstream 32473 5709920 ~ 5712510 (-) True CI01000001_05710029_05712242
CI01000001_05738554_05751605.mRNA mRNA upstream 60680 5738127 ~ 5751605 (-) True CI01000001_05738554_05751605
CI01000001_05753118_05757768.mRNA mRNA upstream 75584 5753031 ~ 5758402 (-) True CI01000001_05753118_05757768
CI01000001_05760403_05789161.mRNA mRNA upstream 82871 5760318 ~ 5789161 (-) True CI01000001_05760403_05789161
CI01000001_05848734_05855468.mRNA mRNA upstream 171186 5848633 ~ 5855805 (-) True CI01000001_05848734_05855468
TU18440 other downstream 383233 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 654976 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 811423 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 884611 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 666657 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 907033 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1160078 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1258630 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1573864 7251311 ~ 7253254 (-) False G17911

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043986 True 1621 mRNA 0.52 5 NC_007134.7 19249968 ~ 19434199 (-)