RNA id: TU18539


Basic Information

Item Value
RNA id TU18539
length 666
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G16552
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5688799 ~ 5689464 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATCTAAAATTGACCAGTAACCAATATGGTACTAATCCAGTATTGCATCCCTGGGAATTAAGGCTAATAATCCCCTAAAAATATAATTGTACAAGTCAGACACATGCATTTTTAAATGAACATTTTTTCAAGTAAAACCAATAAGCTCAAAAGCTGTGGTACAAACAACTGTAGGATTCACATAGTCATCAGACGTCATCATTAGAGCAGCACATGTGTGAATGTGTAAATATTGGGAGTTTGAGGCAGTAATGGTGGATGTTTTAATGCCCTAAGTATATTAGTTTCCTAATACGCACACCTTTAAATGAGCCTCATGAGTCTCTTGTCAGTCTGTCTTCATCGCACACTCACACAAGCCAGTGAACAGCAGAAAGCTGCTTAGGGTGATACTGCAGAGGAGAGCCAGTCGTGAGGATGGCACACACACACACACGGCTGCCACCCACCCACGCACCATCCTCATCCTCATCACAGTCTTTCGCTTTGACCGCACAGACACTTGCTGCTGTAAGCTGATTATTGTACAAAAGTATATGTGTGCTGATACTCAGCAGTATTTACTTTTTAAGTAGGAGCCGAATGTTTGGTGTTTCTACACGCCCCTTTTTGTAGTGTTAGTGGTTGACAGTCTATATGTGTGTGTATTTGTGTGTGTGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18536 lncRNA downstream 41505 5646954 ~ 5647294 (-) True G16549
TU18531 lncRNA downstream 58802 5629743 ~ 5629997 (-) True G16547
TU18529 lncRNA downstream 59721 5628786 ~ 5629078 (-) True G16545
TU18523 lncRNA downstream 70755 5617757 ~ 5618044 (-) True G16539
TU18522 lncRNA downstream 72869 5615659 ~ 5615930 (-) True G16538
TU18540 lncRNA upstream 201 5689665 ~ 5690053 (-) True G16553
TU18542 lncRNA upstream 27359 5716823 ~ 5717028 (-) True G16555
TU18543 lncRNA upstream 29931 5719395 ~ 5719676 (-) True G16556
TU18560 lncRNA upstream 139883 5829347 ~ 5829656 (-) True G16573
TU18423 lncRNA upstream 235420 5924884 ~ 5939544 (-) True G16446
CI01000001_05613623_05676716.mRNA mRNA downstream 11352 5612818 ~ 5677447 (-) True CI01000001_05613623_05676716
CI01000001_05599133_05600420.mRNA mRNA downstream 87059 5598777 ~ 5601740 (-) True CI01000001_05599133_05600420
CI01000001_05594766_05595939.mRNA mRNA downstream 92860 5594604 ~ 5595939 (-) True CI01000001_05594766_05595939
CI01000001_05575469_05577709.mRNA mRNA downstream 111090 5574930 ~ 5577709 (-) True CI01000001_05575469_05577709
CI01000001_05544032_05558747.mRNA mRNA downstream 130052 5543414 ~ 5558747 (-) True CI01000001_05544032_05558747
CI01000001_05710029_05712242.mRNA mRNA upstream 20456 5709920 ~ 5712510 (-) True CI01000001_05710029_05712242
CI01000001_05738554_05751605.mRNA mRNA upstream 48663 5738127 ~ 5751605 (-) True CI01000001_05738554_05751605
CI01000001_05753118_05757768.mRNA mRNA upstream 63567 5753031 ~ 5758402 (-) True CI01000001_05753118_05757768
CI01000001_05760403_05789161.mRNA mRNA upstream 70854 5760318 ~ 5789161 (-) True CI01000001_05760403_05789161
CI01000001_05848734_05855468.mRNA mRNA upstream 159169 5848633 ~ 5855805 (-) True CI01000001_05848734_05855468
TU18440 other downstream 459214 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 730957 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 887404 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 960592 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 654640 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 895016 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1148061 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1246613 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1561847 7251311 ~ 7253254 (-) False G17911

Expression Profile