RNA id: TU17976


Basic Information

Item Value
RNA id TU17976
length 210
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G16071
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5785342 ~ 5785694 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGTTGATGTTGAGGGGATCAAACAAGCTGACAAATGCCACCACACTCCTCTCAACTAGAGCCTTTAGCTGATTAGATATAAGAGTTGAGGCACAGTTGTAAAAGGAGTCAAGCTTTTTGGGTTTGACATTCTGCAGAGTGTCTTTGCTGGTGAGCAGGTGAATGACTTTGGGAAACCATGATTTCATGAGTCTGTCCTCGACTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17965 lncRNA upstream 26936 5756362 ~ 5758406 (+) True G16060
TU17923 lncRNA upstream 75959 5709181 ~ 5709383 (+) True G16027
TU17922 lncRNA upstream 77877 5707255 ~ 5707465 (+) True G16026
TU17921 lncRNA upstream 78238 5706778 ~ 5707104 (+) True G16025
TU17920 lncRNA upstream 79156 5705884 ~ 5706186 (+) True G16024
TU17947 lncRNA downstream 60280 5845974 ~ 5846910 (+) True CI01000001_05842665_05846705
TU17985 lncRNA downstream 85912 5871606 ~ 5871892 (+) True G16080
TU17989 lncRNA downstream 91339 5877033 ~ 5877272 (+) True G16084
TU17995 lncRNA downstream 100096 5885790 ~ 5886041 (+) True G16090
TU18017 lncRNA downstream 222545 6008239 ~ 6009382 (+) True G16112
CI01000001_05734513_05735964.mRNA mRNA upstream 49329 5733121 ~ 5736013 (+) True CI01000001_05734513_05735964
CI01000001_05689002_05702184.mRNA mRNA upstream 82658 5688655 ~ 5702684 (+) False CI01000001_05689002_05702184
CI01000001_05587090_05591952.mRNA mRNA upstream 193204 5587090 ~ 5592138 (+) True CI01000001_05587090_05591952
CI01000001_05581818_05584137.mRNA mRNA upstream 200721 5581818 ~ 5584621 (+) True CI01000001_05581818_05584137
CI01000001_05579315_05580553.mRNA mRNA upstream 204639 5579315 ~ 5580703 (+) True CI01000001_05579315_05580553
CI01000001_05795264_05798555.mRNA mRNA downstream 9570 5795264 ~ 5799834 (+) True CI01000001_05795264_05798555
CI01000001_05803416_05809184.mRNA mRNA downstream 17722 5803416 ~ 5809306 (+) True CI01000001_05803416_05809184
CI01000001_05814686_05836203.mRNA mRNA downstream 28952 5814646 ~ 5837238 (+) False CI01000001_05814686_05836203
CI01000001_05838017_05841551.mRNA mRNA downstream 52323 5838017 ~ 5841683 (+) True CI01000001_05838017_05841551
CI01000001_05842665_05846705.mRNA mRNA downstream 56971 5842665 ~ 5846924 (+) False CI01000001_05842665_05846705
TU17891 other upstream 70391 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 495386 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 720638 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 721413 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2163891 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 1746878 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1746946 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1747070 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2246430 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 3430328 9216022 ~ 9228859 (+) True G17353

Expression Profile