RNA id: TU17985


Basic Information

Item Value
RNA id TU17985
length 287
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G16080
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5871606 ~ 5871892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGTCTTTCCTTCAGTGATTTTGCTTGTTAACAGGCTTGTTAATTCTAAGATGATTCTATAAATAATATATAAAGATTTTGTGGCTCAGATAAGGTCCAGTTCTGGTTTATTTCTTTTCCCTTGGCTGACACGTGGCATTGCTATGGCCTGCTTGTGGCTCAGATCTGGTAAACAGGAGCGCTCCGCCCAAGTGCCATCATTCCACGCCACATGTGGCCCAGATCATCATACCACTCTTGGCAGATGTGGGCCGGATTTGGGCCGGCACAAAGTTGCTATCTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17932 lncRNA upstream 5262 5720416 ~ 5866344 (+) True G16033
TU17933 lncRNA upstream 5262 5720416 ~ 5866344 (+) True G16033
TU17947 lncRNA upstream 24696 5845974 ~ 5846910 (+) True CI01000001_05842665_05846705
TU17976 lncRNA upstream 85912 5785342 ~ 5785694 (+) True G16071
TU17965 lncRNA upstream 113200 5756362 ~ 5758406 (+) True G16060
TU17989 lncRNA downstream 5141 5877033 ~ 5877272 (+) True G16084
TU17995 lncRNA downstream 13898 5885790 ~ 5886041 (+) True G16090
TU18017 lncRNA downstream 136347 6008239 ~ 6009382 (+) True G16112
TU18036 lncRNA downstream 185247 6057139 ~ 6057348 (+) True G16131
TU18039 lncRNA downstream 196716 6068608 ~ 6068868 (+) True G16134
CI01000001_05861486_05864311.mRNA mRNA upstream 7002 5861445 ~ 5864604 (+) True CI01000001_05861486_05864311
CI01000001_05842665_05846705.mRNA mRNA upstream 24682 5842665 ~ 5846924 (+) False CI01000001_05842665_05846705
CI01000001_05838017_05841551.mRNA mRNA upstream 29923 5838017 ~ 5841683 (+) True CI01000001_05838017_05841551
CI01000001_05814686_05836203.mRNA mRNA upstream 34368 5814646 ~ 5837238 (+) False CI01000001_05814686_05836203
CI01000001_05803416_05809184.mRNA mRNA upstream 62300 5803416 ~ 5809306 (+) True CI01000001_05803416_05809184
CI01000001_05883364_05897204.mRNA mRNA downstream 7683 5879575 ~ 5897214 (+) True CI01000001_05883364_05897204
CI01000001_05902661_05905496.mRNA mRNA downstream 30478 5902370 ~ 5905786 (+) True CI01000001_05902661_05905496
CI01000001_05933655_05938581.mRNA mRNA downstream 61763 5933655 ~ 5939241 (+) True CI01000001_05933655_05938581
CI01000001_05942155_05943721.mRNA mRNA downstream 70263 5942155 ~ 5944019 (+) True CI01000001_05942155_05943721
CI01000001_05960289_05963221.mRNA mRNA downstream 86457 5958349 ~ 5963343 (+) True CI01000001_05960289_05963221
TU17891 other upstream 156655 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 581650 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 806902 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 807677 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2250155 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 1660680 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1660748 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1660872 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2160232 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 3344130 9216022 ~ 9228859 (+) True G17353

Expression Profile