RNA id: TU31830


Basic Information

Item Value
RNA id TU31830
length 413
RNA type TUCP
GC content 0.40
exon number 1
gene id G28165
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5732589 ~ 5733001 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAAAACCAAAATGGGCGTTTACCAATCAGTGGCCAATTTCAAACTACATTAGATGTTTTTCAACCATTTTTCAACAGACTTGCTAAAATCATGGCCCACCCCTAAACCAAGCCCCCAGTGGATTAGAGCAAATCGGGTAAAGCGATTGAAAAGCCCATCGTGGTTTAAAAAAAATGCCCCACTGATTGGGAAACACCCACTAGTGTTCTGCAGAGATACACGCCCGCATGATCTTGTGATCATCAACTACAAATCACTGTTAGTTCAATGTCACTGTCTCTACCCATGTGTGCTGTCGACTTTCATCAAAATTTCAATGCTGATCCAACACACTTTAAACATTGAAATTTCAATCTCAGCCAAAATGATGGTTTGGATCAAAACTCAACATTGTATCAATGTCACCATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31793 lncRNA upstream 10467 5717112 ~ 5722122 (+) True G28136
TU31677 lncRNA upstream 87174 5645177 ~ 5645415 (+) True G28023
TU31674 lncRNA upstream 90476 5641840 ~ 5642113 (+) True G28020
TU31672 lncRNA upstream 92657 5639731 ~ 5639932 (+) True G28018
TU31570 lncRNA upstream 150879 5481805 ~ 5581710 (+) True G27924
TU31843 lncRNA downstream 113475 5846476 ~ 5846828 (+) True G28178
TU31809 lncRNA downstream 148480 5881481 ~ 6018658 (+) False G28148
TU31824 lncRNA downstream 212697 5945698 ~ 5947048 (+) True G28159
TU31818 lncRNA downstream 218668 5951669 ~ 5953194 (+) True G28154
TU31811 lncRNA downstream 280578 6013579 ~ 6018658 (+) True G28148
CI01000004_05474127_05476501.mRNA mRNA upstream 255834 5473079 ~ 5476755 (+) True CI01000004_05474127_05476501
CI01000004_05459139_05467673.mRNA mRNA upstream 263732 5459139 ~ 5468857 (+) True CI01000004_05459139_05467673
CI01000004_05454350_05455993.mRNA mRNA upstream 276596 5453841 ~ 5455993 (+) True CI01000004_05454350_05455993
CI01000004_05397192_05402109.mRNA mRNA upstream 330480 5397095 ~ 5402109 (+) True CI01000004_05397192_05402109
CI01000004_05389431_05393230.mRNA mRNA upstream 338378 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
CI01000004_05735852_05752650.mRNA mRNA downstream 2797 5735798 ~ 5754011 (+) True CI01000004_05735852_05752650
CI01000004_05781905_05788633.mRNA mRNA downstream 48601 5781602 ~ 5790006 (+) True CI01000004_05781905_05788633
CI01000004_05800602_05802011.mRNA mRNA downstream 67601 5800602 ~ 5802087 (+) True CI01000004_05800602_05802011
CI01000004_05812640_05834517.mRNA mRNA downstream 79639 5812640 ~ 5834517 (+) True CI01000004_05812640_05834517
CI01000004_05837208_05841141.mRNA mRNA downstream 104207 5837208 ~ 5841141 (+) True CI01000004_05837208_05841141
TU31414 other upstream 358786 5372825 ~ 5373803 (+) False G27805
TU31416 other upstream 358786 5372825 ~ 5373803 (+) False G27805
TU31417 other upstream 358786 5372825 ~ 5373803 (+) False G27805
TU31418 other upstream 358786 5372825 ~ 5373803 (+) True G27805
TU29692 other upstream 2180143 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU32005 other downstream 737027 6470028 ~ 6502087 (+) True G28302
TU32079 other downstream 838219 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 1921771 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 2700704 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 2866234 8599235 ~ 8599603 (+) True G28859

Expression Profile