RNA id: TU32770


Basic Information

Item Value
RNA id TU32770
length 286
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G28971
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8925795 ~ 8926080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATATTAAGCAGCACAACTGTTTTCAACATTGTTAATAAGAAAAGTTTCTTGAGCAGCAAATCGGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGAAAATTCAGCTCTGCCGTTACAGGAATACATTACATTTATTATTATTTATATATTACTGTTTTGTTTTTTTGATCAAATAAATGCAGCGTTTGTGAACATTCACAAAAACATTCACAAATCTTACTGACCCCAAACCCGTTGAAAGGCAATTTGAAATGTTAAAAATGTAGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32768 lncRNA upstream 2855 8922722 ~ 8922940 (+) True G28969
TU32767 lncRNA upstream 3110 8922483 ~ 8922685 (+) True G28968
TU32758 lncRNA upstream 19414 8906172 ~ 8906381 (+) True G28959
TU32754 lncRNA upstream 29553 8895462 ~ 8896242 (+) True G28955
TU32734 lncRNA upstream 43195 8882396 ~ 8882600 (+) True G28947
TU32772 lncRNA downstream 1065 8927145 ~ 8927490 (+) True G28973
TU32774 lncRNA downstream 10339 8936419 ~ 8938863 (+) True G28975
TU32775 lncRNA downstream 12886 8938966 ~ 8939175 (+) True G28976
TU32708 lncRNA downstream 40935 8967015 ~ 8970631 (+) True G28929
TU32789 lncRNA downstream 45749 8971829 ~ 8973638 (+) True G28989
CI01000004_08875722_08877149.mRNA mRNA upstream 48288 8875722 ~ 8877507 (+) True CI01000004_08875722_08877149
CI01000004_08866163_08873681.mRNA mRNA upstream 51999 8866034 ~ 8873796 (+) True CI01000004_08866163_08873681
CI01000004_08823382_08844233.mRNA mRNA upstream 81450 8822749 ~ 8844345 (+) True CI01000004_08823382_08844233
CI01000004_08806791_08812203.mRNA mRNA upstream 113233 8806791 ~ 8812562 (+) True CI01000004_08806791_08812203
CI01000004_08746864_08765484.mRNA mRNA upstream 159890 8746484 ~ 8765905 (+) True CI01000004_08746864_08765484
CI01000004_08947119_08949558.mRNA mRNA downstream 21039 8947119 ~ 8949644 (+) True CI01000004_08947119_08949558
CI01000004_08976512_08980033.mRNA mRNA downstream 50174 8976254 ~ 8980958 (+) False CI01000004_08976512_08980033
CI01000004_08987501_08991239.mRNA mRNA downstream 61078 8987158 ~ 8991469 (+) True CI01000004_08987501_08991239
CI01000004_08996083_08997863.mRNA mRNA downstream 70003 8996083 ~ 8997863 (+) True CI01000004_08996083_08997863
CI01000004_09002274_09004879.mRNA mRNA downstream 75962 9002042 ~ 9005023 (+) True CI01000004_09002274_09004879
TU32637 other upstream 326192 8599235 ~ 8599603 (+) True G28859
TU32590 other upstream 474568 8439958 ~ 8451227 (+) True G28818
TU32454 other upstream 1269412 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 2351374 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 2423708 6470028 ~ 6502087 (+) True G28302
TU32792 other downstream 50358 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 50358 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 1571296 10497376 ~ 10497788 (+) True G30797
TU35938 other downstream 2711171 11637251 ~ 11642400 (+) True G31710
TU35811 other downstream 2738693 11664773 ~ 11665473 (+) False G31611

Expression Profile