RNA id: CI01000006_12348300_12348961.mRNA



Basic Information


Item Value
RNA id CI01000006_12348300_12348961.mRNA
length 1860
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000006_12348300_12348961
representative False

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12347180 ~ 12349383 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGCCGCTCCGACTTTTGTACAGACTCAAAACACCTGTTCACAGTGAAGGGGGCGTATCGGTTCATATACCCAAATTATATATTCGTTCACAGTCCACTCCACACTCGAATCCTGTTGGTTCATGCCTTCGTCAGTCTTTGAAGTCAGGGGAGCGGTCATATGGTCTAAAAGGAGACATCCGTGAACAAAAGTGAAAGAATACGATCGCTACACATAACTCCACCCAGAGCCGTTGAAAATATTTAACGGCTCTGACTCCACCCATTAGGTCCACAGAGGTGGAGCTGGACGTCATATGGCTCTGCGGTTGCGGTGAGCACCACTTCAAGGAAAGCGATTCACAAATCCCGGAAAGAATAGTTTCTTTTTCAACGAGGCTGACTCTAGTGGTGAACAGCTGTACTTTTTACGTCACGAACAATGGCAGAATTTGTTAAAGCTCAAATTAAGGGTGATAAAGTAGTTGTGTTTTTGAAGCCGTCTTGTCCTTACTGCGTACTGGCGAAGGATGTTTTGTCGAAGTATAGATTCAAAGATGGACAGCTGAACTTGGTCGATATCAGCGGACGCAGTGACACGGGCAGTATACAAGACTATCTGCAACAGATCACAGGCGCGCGCACCGTTCCTCGAGTCTTCATAGGGGAAAAGTGTATTGGAGGAGGAAGTGATGTCGAAAGTCTTGACCGTTCTGGAGCTCTGGAAGGCATGTTGCAGGCAATCGGATCTCTGCAGTGAGGGTATACTTCACAGTTCTTCTATTGTAAACAATATACAACATAATTATACCAGTGCTTCTCAACTGGTTTTGCTTTAGGGCCAAGATTTGACATTGGACGTGGCCATTGTGCCAAAATTGTGTATTGTACACAAAAATATCCTTAAAATGTTTTCAAAAACTGCCTTTTCCCTCACCAGCCAGTAATTATGTTTCACTAAACACATCATGGTCAGCACAAAACATATTTGTCCATGCAGTCTGGCTCCAGTGTTATGAGATTATGGTTATTAGTATTTTGAAAAAACCTGTCTGGCTCACAGTGTCTTTTAGCCTTCATCTACAGTAGCATTGTTTTTCTGATCTATATAAAATACATTTAATGACACATTATTACATTATTAATGTCATTTATATAGATCAGTGGTCACCACCCACCCGTTGAGAACAGCTGGTTAAGATTTAAAGGGATAGTTCAGCCAAAAATGAAAATTATCCCATCTTTTTTCAGACGAACACAATTGAAGGTATATTTAAAAATATCCTGGCTCTTCCAAGCCTTATTATGGTAGTGAATGGGGGGTGAGATTTTGAAGCTCAAAAAAATGCATCCATCCATCATAAAAATAATTCATACGGCTGCTGGAAGCTAGTTATTTTAGTTTATAAAGTTTTAAATATGGATATTTTTCTTACAAAACCCATCACTTCACTTCAGAAGGCCTTAATTAACCCCCTGGAGCAGTATGGATTATTTTTATGATTGATGGATGCATTTTTTGGGGCTTCAAAATCTCGCCCCCCATTCACTACCATTATAAAGCTTGGAAGAGCCAGGATATTTTTGAATATATCTTCGATTGTGTTTGTCTGAGAGAAGATAGTCATATACACCTAGGATAGCTTGAGGGTGAGTAAATCATGGGATAATTTTCATTTTTTGGCTGAACTATCCATTTAAGTCACAGACTCTGAGAACAAACACGCATCCTTCTAAAATGTCTTTATTCAGCATAAGATGAGGGTCAACAGAACTGGATTAGACTAAAGACAGCCAGAATCTACGTCGACCACACCAACTGCACTAACAGGCGATCCACATGCTGGATGCGTACTTTGTACGTTATTAGTTGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55066 lncRNA downstream 168986 12171561 ~ 12178194 (-) True G48422
TU55147 lncRNA downstream 187097 12159558 ~ 12160083 (-) True G48490
TU55057 lncRNA downstream 264553 12082243 ~ 12082627 (-) True G48413
TU55035 lncRNA downstream 295496 12051341 ~ 12051684 (-) True G48393
TU55027 lncRNA downstream 303416 12043548 ~ 12043764 (-) True G48385
TU55115 lncRNA upstream 113021 12462404 ~ 12463511 (-) True G48459
TU55239 lncRNA upstream 304246 12653629 ~ 12653890 (-) True G48571
TU55244 lncRNA upstream 350089 12699472 ~ 12699782 (-) True G48576
TU55245 lncRNA upstream 350686 12700069 ~ 12700268 (-) True G48577
TU55246 lncRNA upstream 352207 12701590 ~ 12701857 (-) True G48578
CI01000006_12309164_12310107.mRNA mRNA downstream 37073 12307563 ~ 12310107 (-) True CI01000006_12309164_12310107
CI01000006_12289635_12293874.mRNA mRNA downstream 53306 12289515 ~ 12293874 (-) True CI01000006_12289635_12293874
CI01000006_12274550_12280868.mRNA mRNA downstream 66312 12273081 ~ 12280868 (-) True CI01000006_12274550_12280868
CI01000006_12252567_12267751.mRNA mRNA downstream 79429 12251931 ~ 12267751 (-) True CI01000006_12252567_12267751
CI01000006_12238313_12238815.mRNA mRNA downstream 108129 12238313 ~ 12239051 (-) True CI01000006_12238313_12238815
CI01000006_12352899_12370703.mRNA mRNA upstream 3255 12352638 ~ 12370703 (-) True CI01000006_12352899_12370703
CI01000006_12380830_12394437.mRNA mRNA upstream 31082 12380465 ~ 12394437 (-) True CI01000006_12380830_12394437
CI01000006_12468191_12470593.mRNA mRNA upstream 118262 12467645 ~ 12471559 (-) True CI01000006_12468191_12470593
CI01000006_12479463_12483283.mRNA mRNA upstream 129025 12478408 ~ 12483283 (-) True CI01000006_12479463_12483283
CI01000006_12490152_12496647.mRNA mRNA upstream 140116 12489499 ~ 12496647 (-) True CI01000006_12490152_12496647
TU54279 other downstream 692773 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU54208 other downstream 1314053 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 1858745 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 4836224 7510829 ~ 7510956 (-) True G45821
TU51019 other downstream 5370308 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736
TU55095 other upstream 1376 12350759 ~ 12529810 (-) False G48450
TU55097 other upstream 219922 12569305 ~ 12571925 (-) False CI01000006_12569291_12581457
TU55101 other upstream 219922 12571606 ~ 12571925 (-) True G48450

Expression Profile