RNA id: TU55245


Basic Information

Item Value
RNA id TU55245
length 200
lncRNA type intronic
GC content 0.36
exon number 1
gene id G48577
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12700069 ~ 12700268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAGTGAGCTATACATTTATTTGCTATAGAAAGTAGCCTATATTTCTGCCCAATGTTGGCAAGTATCCGTAAAGTACAACCTCTCCAGCTTTTAAAAGCAACATATTTGTCAGATGAAGGATCTTGTATCTCTGAGTAACAACATTTCGTTCCACCTGAACTAATGCCTTGAATACACAAAGACATCTGGCAGTGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55244 lncRNA downstream 287 12699472 ~ 12699782 (-) True G48576
TU55239 lncRNA downstream 46179 12653629 ~ 12653890 (-) True G48571
TU55115 lncRNA downstream 236558 12462404 ~ 12463511 (-) True G48459
TU55066 lncRNA downstream 521875 12171561 ~ 12178194 (-) True G48422
TU55147 lncRNA downstream 539986 12159558 ~ 12160083 (-) True G48490
TU55246 lncRNA upstream 1322 12701590 ~ 12701857 (-) True G48578
TU55247 lncRNA upstream 9002 12709270 ~ 12709479 (-) True G48579
TU55248 lncRNA upstream 12887 12713155 ~ 12713603 (-) True G48580
TU55297 lncRNA upstream 95269 12795537 ~ 12795763 (-) True G48627
TU55298 lncRNA upstream 95567 12795835 ~ 12796174 (-) True G48628
CI01000006_12677322_12678268.mRNA mRNA downstream 21801 12677162 ~ 12678268 (-) True CI01000006_12677322_12678268
CI01000006_12670692_12674459.mRNA mRNA downstream 25610 12670692 ~ 12674459 (-) True CI01000006_12670692_12674459
CI01000006_12647432_12651091.mRNA mRNA downstream 48978 12647003 ~ 12651091 (-) True CI01000006_12647432_12651091
CI01000006_12583905_12591335.mRNA mRNA downstream 108734 12583784 ~ 12591335 (-) True CI01000006_12583905_12591335
CI01000006_12569291_12581457.mRNA mRNA downstream 117582 12569227 ~ 12582487 (-) False CI01000006_12569291_12581457
CI01000006_12718517_12732483.mRNA mRNA upstream 18118 12718386 ~ 12733092 (-) True CI01000006_12718517_12732483
CI01000006_12853718_12865868.mRNA mRNA upstream 153413 12853681 ~ 12865868 (-) True CI01000006_12853718_12865868
CI01000006_12876023_12888072.mRNA mRNA upstream 175560 12875828 ~ 12888072 (-) True CI01000006_12876023_12888072
CI01000006_12891987_12901219.mRNA mRNA upstream 191278 12891546 ~ 12901219 (-) True CI01000006_12891987_12901219
CI01000006_12921799_12924125.mRNA mRNA upstream 221347 12921615 ~ 12924156 (-) True CI01000006_12921799_12924125
TU55097 other downstream 128144 12569305 ~ 12571925 (-) False CI01000006_12569291_12581457
TU55101 other downstream 128144 12571606 ~ 12571925 (-) True G48450
TU55095 other downstream 128885 12350759 ~ 12529810 (-) False G48450
TU55104 other downstream 350998 12346192 ~ 12346649 (-) False G48451

Expression Profile