RNA id: CI01000009_05513478_05515588.mRNA


Basic Information

Item Value
RNA id CI01000009_05513478_05515588.mRNA
length 1075
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000009_05513478_05515588
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5513269 ~ 5515588 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGACGTGCAGAAATTTCCTCTGAAGATTTGCTCTGAAGTCACAGTGAAGATGACTGACAGATTGTTTGAAGATAAACAACATGCCTCCCTATATCAAAAATATCGATTTGATCCACCTGATGAACTGAAGGAGCTTATTCTCCAGTATCTGGACAAAAAGAAAGGAAAGCCCCATCAGCTGGCCGTGGATTTAGGCTGCGGAACAGGGCAGAACTCTCGTATGCTGACAGCATACTTTCAGCAGGTGGTGGGCATTGATGTCAGTGAATCTCAGGTGCAGGAAGCGAGAGCACTGCCGGGGTTCCCTAACCTCAGCTACAGAGTAGGCACAGCAGAGGAGCTGCCATTCCCAGATGGCTCGGTGGATCTGCTGACGGCTGCGTCTGCAGCTCATTGGTTTGACACTGAACGTTTCATAAAGGAGGCTGTACGTGTCCTGAAACCTCATGGCTGCCTGGCTCTCTTTGGTTATGGAGACAATATGAAAATGTACCATGAGTCCTGTGGTGATCGACTTAATAACATATATGAAGAAGTAAAGCAAATTCTGCTGCCCTACACAAGCAAAAGGATAGCTGGGGCCATCAGTAAGCTAAAGGACTTATTTGAAGCCGTACCCTTCCCAGATAAAGAGAGGATTGAAATAATTCCAGTAAAGCTGCAGCTGAGCATCAAGAACGTAATTGGTTTTATTCAGACGTTCTCCATGTACCAGGCCTATCTGAGAGCCGATCCAAATGCCGCAACTGCGCTGTTGGAGAAAACAACATCACGTATTCTAGATGAGATGAAAGAGTCATCAACAGAGGCCAAAGTTGACTTTATAATGGAGTACTACTGTGTGCTTGCATGTAAACCTGAGTGACACATGAGTTCCTAAAGAGGTTTTAATCTTACTTTAATCAAGTTGTTCACAAATCTGTGAGCTTACAAACACTATTTTTTATTTCACATGAAAGATTCTGAAAATATAAATCACTTAGTATTTGCACTATGTATTATGATGTATGATGTTACTTTGAAATAATTTACTCTACAAGCATACATGAATATAATGTTGTTTAAAATAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60943 lncRNA downstream 4480 5506972 ~ 5508789 (-) True G53514
TU60945 lncRNA downstream 9879 5502395 ~ 5503390 (-) True G53515
TU60934 lncRNA downstream 14274 5491811 ~ 5498995 (-) True G53511
TU60978 lncRNA downstream 36529 5474236 ~ 5476740 (-) True G53545
TU60932 lncRNA downstream 104925 5407998 ~ 5408344 (-) True G53510
TU60990 lncRNA upstream 8056 5523644 ~ 5539688 (-) True G53552
TU60995 lncRNA upstream 23617 5539205 ~ 5546637 (-) True G53556
TU61005 lncRNA upstream 37302 5552890 ~ 5553101 (-) True G53566
TU61390 lncRNA upstream 69451 5585039 ~ 5596678 (-) True G53916
TU61467 lncRNA upstream 215046 5730634 ~ 5730864 (-) True G53988
CI01000009_05402729_05410456.mRNA mRNA downstream 102813 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05367161_05370504.mRNA mRNA downstream 142765 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05362086_05363378.mRNA mRNA downstream 149188 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05278137_05361256.mRNA mRNA downstream 151791 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05190789_05192684.mRNA mRNA downstream 320379 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05571226_05587885.mRNA mRNA upstream 54913 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05675971_05682578.mRNA mRNA upstream 160184 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05724421_05725824.mRNA mRNA upstream 208253 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05759177_05759509.mRNA mRNA upstream 243411 5758999 ~ 5759770 (-) True CI01000009_05759177_05759509
CI01000009_05784097_05785842.mRNA mRNA upstream 268477 5784065 ~ 5785842 (-) True CI01000009_05784097_05785842
TU60944 other downstream 8021 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1281800 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2251312 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2613862 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2950736 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2910233 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3342564 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6772629 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6772629 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 8459800 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073207 False 1558 mRNA 0.41 6 NC_007120.7 28688574 ~ 28691972 (+)