RNA id: CI01000009_05278137_05361256.mRNA


Basic Information

Item Value
RNA id CI01000009_05278137_05361256.mRNA
length 5032
RNA type mRNA
GC content 0.47
exon number 25
gene id CI01000009_05278137_05361256
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5277137 ~ 5361478 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCTCCTCAAGCAAAGGCGATTTCCGTTCGCGAGCGTAGGTTTTTATAGGACTAACTTTCGTGGCTACTGAAACGTTATTTGAAAACATTGCTGAAACGTATGTTACAACGAAACAAACTTTGCAAGACCCCCTGACCTTTTCTTTGAACTAAAATAATTAGGGAGTCAAATCCCCATGTTTCGCAACCTGTAGTCATAAACTGCATGTTGTAGTCGAGATCATGTCCAGATCTAACAGCGTGAGCCCACCCGGCGCTGGCGCTCCTGTATTGAGGGGAGGGACGGAGCACAGATCCGCTTGGGGCGAGTCTGAGTCCGTGGCGAACGGATGTCCATACTCGGCCAGATCCTCCTGCAAAAAGCTCATACGGTCCAACAGTCGGTGGAGAGAGGACGATGACTTCGAGCGACAACCGGGCCGAGCCACGACCACCGTCAGCCGGGTTAGTTTCAGATCCAAGTCTGCTTGGCAAGAACACGGAGAGGAGAGTCGCAACAATAACCGATCGTCCCCGAGGTACCGAGATGGAGAAGTGAGACCCAAGTCCGTGGAGTTGGGTTTGGAGGACAGGAGAACCAAGTCCAAGCCAGAGGAGGAGCTCATGCCTGAAGTTAACTTTTCCATGAGCGAGTGCTGCAACAGCGTGATGCATATTTTCAAATCCAAGAAGTTCCAGTCGGAGAAGTTGGAGAGGCTTTACCAGCGCTACTTCTTCCGACTCAACCAGAGCAGTTTGACGATGCTCATGGCCGTTCTTGTGCTGGTGTGCGCGGTGATGCTGGGGTTCCACTGCGCTGGAGGAGAGGAGTGGAGGTACACTTACGTGGTTGTTTTCTCCACGGCAATCGTACTCATCCTCACGCTGATTGTCGTGTGCAACAGGAACGGCTTCCATCAGGATCACATGTGGATAGTTTGCTATGTGCTCATTTTGCTGGTGCTGGCTGTACATGTGATCGGTGTGTGGCTGGTGAAGCCGCGGAGCGCGTCTGAAGGCATCTGGTGGACCATGTTTTTCATCTATGTCATTTACACACTTCTGCCGGTGCGGATGAGAGCAGCGGTCATCACTGGAATTATACTGTCTGCCATACATGTGGTGGTCTCGTGGAAGTTAAACGAAAGGGACGTCTTTTTGTGGAAACAGCTCGTGTCCAATGTCCTGATCTTCTCCTGCACTAATATAGTTGGTGTATGCACACACTACCCAGCAGAAGGCTCACAGAGACAAGCCTTCCAGGAGACCAGAGAATGTATTCAAGCTCGTCTGCACTCTCAAAGAGAAAACCAGCAACAGGAACGCCTCCTCCTCTCTGTGCTTCCTCGACATGTCGCCATGGAGATGAAAGCTGACATAAATGCCAAACAAGAGGATATGATGTTCCACAAGATCTATATTCAAAAGCATGACAATGTGAGTCGTGGGTCTGTCTGTTTTCCTTTTTCAGTAAAGCCCCCACCAAATAGGCTTCATGGTCAGAGGAATTATGCCCAACATTCTCTTAATGTGATTGTCATCTATTGCTATAGAGAGTGCGCTCTCCCGAACGAACCTGTCTGCTGTGCCATTGGCATGGAGTTAGTGATGACCCTCAACGAGCTCTTCGCACGATTCGACAAACTAGCTGCCGAGAATCACTGTCTGCGGATTAAGATCCTAGGCGACTGCTACTATTGCGTGTCGGGGCTGCCCGAGGCTCGTGCTGACCATGCGCACTGCTGCGTGGAGATGGGTGTGGACATGATCGAAGCAATCTCGTTGGTGAGGGAAGTCACTGGCGTCAACGTCAATATGCGTGTGGGTATACACAGCGGGCGTGTCCACTGCGGGGTGCTGGGATTAAGAAAGTGGCAGTTTGATGTCTGGTCCAACGATGTCACCTTGGCCAATCACATGGAAGCTGGGGGCAAAGCAGGGCGTATCCATATCACTAAGGCCACTCTGAATTACCTGAATGGGGATTATGATGTGGAACCTGGATTTGGTGGAGAAAGAAACGTCTATCTCAAGAAGCACAACATTGAAACCTACCTCATTGTGGGCTGCAGTCAGAAGCGGAAAGAAGAAAAGGCCATGATTGCTAAGATGAACCGGCAACGCACCAACTCGGTCACTCATAATAGCACTCACTGGACTGACCGGCCCTTCTACAATCACCTGGGTAGCAATCAGGTTTCCAAGGAGATGAAGAGGATGGGATTTGAGGATCCCAAAGACAAAAACACGCAAGAAAACCTGAATCCAGAGGATGAGGTGGACGAGTTTCTGGGCCGCGCCATTGATGCTCGGAGCATCGACCGGTTACGGTCCGAACACGTCAAGAAATTTCTGCTGACATTCCGAGAACCTGACCTGGAGAAGAAGGAGACTCGGTTTCTTTGTAAAGATGGTGATGAAAGGGTAATAGAAGGGAAGTCTCTCAGTCTCTGCATTTACGTTCTCCTCCGTCTGCAGTTGCATACACATTTAGCAGGTTGTACGCTGGTCCTGTACTCCAAACAGGTAGACGCCAGGTTTGGAGCGTACGTAGCCTGCGCCTCCCTCGTCTTTTTATTCATCTGCTTCATTCAGATCGTCATTGTGCCACACTCCGGGCTGATGGTTGGCTTCTATATTCTGTGCCTGGTCCTCCTGATGGCTGTCATGTTCATCTCAGCCATTTACTCCTGTTTTGGGTTTTTCCCTGTGCCTCTGCAAACTCTGTCAAAAAGGATTGTTCAGTCCAGACTCAACAGCACCCTGTTCACCTGCAGTACAGATGACCTGAGGATGTGTTTAGGGCAGGAGTTTAACATCAGCCCCAGAGATGTAAACGCTTGTCATGTCCTCAACTCTTCCTTCAACTACTCTCTCTGGTCTCAGGACAGCTTCTGCAACAGCTCGTCACCCACCTGCAATTTCCCAGAGTACTTCTCTTCATGTGTGCTGCTCAGTTTACTGGCCTGCTCAGTGTTCCTACAGGTCAGCAGTATTGGTAAACTCTTCCTCATGCTCTTCATCGAGATCCTGTATGTGCTCATCATGGAGGTGCCTGAGGTCAGCCTTTTTGACAATGTGGACCTGCTGGTCATGGCCAATGCCTTAGAGTATAATGGAACAAGCTGTGCGACAGACATGCGGGTTCCTCTAAAGATCATGACTCCAGTAGTCATCACGGTCTTTGTGCTAGCTCTCTACCTTCATGCACAGCAGGTGGAGTCCACTGCCAGACTGGACTTTCTCTGGAAGTTACAGGCTACAGAGGAGAAGGAGGAGATGGAGGAACTTCAGGCCTACAACCGTCGGCTTCTCCACAACATCTTGCCCAAAGATGTGGCTGCACACTTTCTGGCTCGCGAGCGGCGGAACGACGAACTGTATTATCAGTCGTGCGAATGTGTGGCTGTCATGTTTGCCTCCATCAGCAACTTCTCTGAGTTCTATGTGGAACTGGAGGCCAATAATGAAGGTGTCGAGTGCTTGAGACTTCTCAACGAGATCATCGCTGACTTTGATGAGATCATTAGTGAGGATCAGTTTCGTCAACTAGAAAAGATCAAAACCATTGGCAGCACCTACATGGCTGCGTCTGGGCTTAATGACTCCACTTATGATAAAGTAGGAAGGTCGCACATTCGCGCTCTAGCAGACTACGCCATGCGCCTCATGGACCAGATGAAGTACATCAATGAGCACTCTTTTAATAACTTCAAAATGAAGATCGGTCTCAACATGGGTCCCGTCGTGGCTGGTGTCATAGGGGCTCGTAAACCGCAATATGACATATGGGGGAATACTGTGAATGTAGCCAGCCGTATGGACAGCACTGGGGTACCTGAGAGAATACAGGTCACAACTGACCTCTACCAGGTTCTCAGCTCATATAACTACACACTGGAGTGCAGAGGCGTTGTGAAGGTGTGGCAGGACTGCGATCTTACTCCACCAACTGGTCCTGGTGGCTCCAAAACAAAACTGCATGAAAACACTGAAGCCAATATACTTGTAAAACACATGTTTTATGTGTATATGATTCGTCAGTGTATGTAAAGAGTTCTGTTCATACGGTCCTGTTGCGTTCTACACTGTCTAGGTGATATCGCAATAGATAGAGATATCACAATGAGCTAATATATGGTAGAAGGCCATAGTGAGCACAGCAGCTTTACAAACCCCGAACTTTGCTGCAGCGACTGTGGTTGTTACTGGTAAGGGAGCTAGTGTTGACAGTGTTATCTCTGAGCGATCTACAATTGAGAATGAAGCCCCGTTCTCGCCGCCAGCAACTTAAAACGACCCGAAGTCATACATTTTCATAGCCGGGTTGTGGCCAGGTCCAACGGTGCAACAAACGTTTAGCTAGAGCGATTTGTCTTCATTTAACAACTGTAGTTGAGAATCCGCTTGTAGTCAGCAACTTTGTGTCTCTTACCATGTGCAGGGACAGTATTAAATACTGATGCGTACTATATGACAATTAAGTGTGTGTGGACCCAAATAGCCTGTCGTTTGTGCTTTTGGTACAGATAAATGGCATTCCACAATGACAAAGAGGACATACTGATTCTCGTTCTTCTTTAATATGATGCATACTTATATACGTTTTTCCTTCCAAAATGATCATTTTAGCAGCATAGACTGATTTGATGTCAACAAGGGATGAGACGGAACAAAAAAGCTACCAGTGTGGCTGATGGCGACATGTAATGAGAAAGTTTCCGGTGGCATGAACGTGGCTTGAGACTTCAACTTTGTGTTCCAAACAAATTTACATTCACAAAACTGCACACTATTAAAGATAGAGGAAAATGGCCAAATGTGGCTGTTTTTGTATTTTTAACATTTTATATTTTGACTCCAAAAGCCAAACTGTCAAAGCTATTTTAGATTATATATTTTGTACATTAATATATTAAAATAATGTCTATAAACACCAATGTGTATTTAGATATTTAAACATATATATATGCTAAAGTCCTGCACATTTGAACAGGAGGGGATACACAAATTATCAGTCACCCTTTTTTGTCACCGTATCCATTTAAATAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K08045 ADCY5; adenylate cyclase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60842 lncRNA downstream 25378 5250290 ~ 5251759 (-) True G53425
TU60893 lncRNA downstream 35787 5240424 ~ 5241350 (-) True G53476
TU60832 lncRNA downstream 259979 5013895 ~ 5017158 (-) True G53415
TU60555 lncRNA downstream 430034 4846901 ~ 4847103 (-) True G53173
TU60549 lncRNA downstream 438366 4838462 ~ 4838771 (-) True G53167
TU60820 lncRNA upstream 4288 5365766 ~ 5367842 (-) False CI01000009_05367161_05370504
TU60821 lncRNA upstream 4288 5368144 ~ 5368380 (-) True G53405
TU60906 lncRNA upstream 8102 5369580 ~ 5369781 (-) True G53487
TU60909 lncRNA upstream 12792 5374270 ~ 5374719 (-) True G53490
TU60917 lncRNA upstream 25843 5387321 ~ 5387664 (-) True G53498
CI01000009_05190789_05192684.mRNA mRNA downstream 84247 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05110455_05136845.mRNA mRNA downstream 138823 5110205 ~ 5138314 (-) True CI01000009_05110455_05136845
CI01000009_05046374_05094978.mRNA mRNA downstream 181164 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
CI01000009_04976520_04987680.mRNA mRNA downstream 289430 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_04888729_04895882.mRNA mRNA downstream 380658 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_05362086_05363378.mRNA mRNA upstream 564 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05367161_05370504.mRNA mRNA upstream 4457 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05402729_05410456.mRNA mRNA upstream 41026 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05513478_05515588.mRNA mRNA upstream 151791 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05571226_05587885.mRNA mRNA upstream 209023 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
TU60172 other downstream 1045668 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2015180 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2377730 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2714604 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 3036373 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 140917 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3064343 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3496674 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6926739 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6926739 12288217 ~ 12288977 (-) True G59097

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074613 False 3814 mRNA 0.51 21 NC_007120.7 37872577 ~ 38021997 (-)