RNA id: TU60978


Basic Information

Item Value
RNA id TU60978
length 343
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G53545
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5474236 ~ 5476740 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGGGAAAAAAGAGAAAAAAGACATTATCCTAGTGGCACAAAAGTTCAAAAAAAACAAAAGCACAGTGGGGGTAAAAATTTTTTGACTAGGACTGTCACTAGAGACTGACCGTGTGATGTCCAGAGCTTTTTGGACCTTAGCTTGGACTGAGCCCAAGAGGTCAGCTCCCATTTTCTTCAGTAGTTGAGTGAGCAGAACAAAAAGCCAGTCCTGGAGATCCTCTCTGTGCACAGTAATGAAGTCCACTAGTGTCTCCAAGAACATGCTAAACACTACCTTGCTGTGAGGATCTGCAAACATCCTGGTGAAGATCTCACACAGCCTCTTCAGCTCCACACGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60932 lncRNA downstream 65892 5407998 ~ 5408344 (-) True G53510
TU60924 lncRNA downstream 79911 5393525 ~ 5394325 (-) True G53503
TU60917 lncRNA downstream 86572 5387321 ~ 5387664 (-) True G53498
TU60909 lncRNA downstream 99517 5374270 ~ 5374719 (-) True G53490
TU60906 lncRNA downstream 104455 5369580 ~ 5369781 (-) True G53487
TU60934 lncRNA upstream 15071 5491811 ~ 5498995 (-) True G53511
TU60945 lncRNA upstream 25655 5502395 ~ 5503390 (-) True G53515
TU60943 lncRNA upstream 30232 5506972 ~ 5508789 (-) True G53514
TU60990 lncRNA upstream 46904 5523644 ~ 5539688 (-) True G53552
TU60995 lncRNA upstream 62465 5539205 ~ 5546637 (-) True G53556
CI01000009_05402729_05410456.mRNA mRNA downstream 63780 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05367161_05370504.mRNA mRNA downstream 103732 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05362086_05363378.mRNA mRNA downstream 110155 5362042 ~ 5364081 (-) True CI01000009_05362086_05363378
CI01000009_05278137_05361256.mRNA mRNA downstream 112758 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05190789_05192684.mRNA mRNA downstream 281346 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05513478_05515588.mRNA mRNA upstream 36529 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05571226_05587885.mRNA mRNA upstream 93761 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05675971_05682578.mRNA mRNA upstream 199032 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05724421_05725824.mRNA mRNA upstream 247101 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05759177_05759509.mRNA mRNA upstream 282259 5758999 ~ 5759770 (-) True CI01000009_05759177_05759509
TU60172 other downstream 1242767 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2212279 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2574829 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2911703 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 3233472 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 25655 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 2949081 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3381412 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6811477 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6811477 12288217 ~ 12288977 (-) True G59097

Expression Profile