Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU57901 |
| length | 958 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G50879 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 728863 ~ 729820 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU57898 | lncRNA | upstream | 381 | 727073 ~ 728482 (+) | True | G50876 |
| TU57924 | lncRNA | upstream | 31023 | 697605 ~ 697840 (+) | True | G50902 |
| TU57900 | lncRNA | upstream | 33648 | 694026 ~ 695215 (+) | True | G50878 |
| TU57902 | lncRNA | upstream | 83814 | 644785 ~ 645049 (+) | True | G50880 |
| TU57905 | lncRNA | upstream | 92158 | 636474 ~ 636705 (+) | True | G50883 |
| TU57931 | lncRNA | downstream | 5907 | 735727 ~ 736025 (+) | True | G50909 |
| TU57933 | lncRNA | downstream | 12181 | 742001 ~ 745178 (+) | True | G50911 |
| TU57939 | lncRNA | downstream | 16374 | 746194 ~ 756171 (+) | True | G50913 |
| TU57944 | lncRNA | downstream | 27302 | 757122 ~ 760273 (+) | False | G50917 |
| TU57945 | lncRNA | downstream | 27302 | 757122 ~ 757733 (+) | True | G50917 |
| CI01000009_00719164_00724772.mRNA | mRNA | upstream | 3812 | 719164 ~ 725051 (+) | True | CI01000009_00719164_00724772 |
| CI01000009_00704243_00710805.mRNA | mRNA | upstream | 18058 | 704065 ~ 710805 (+) | True | CI01000009_00704243_00710805 |
| CI01000009_00620687_00621072.mRNA | mRNA | upstream | 107326 | 620687 ~ 621537 (+) | True | CI01000009_00620687_00621072 |
| CI01000009_00611583_00617762.mRNA | mRNA | upstream | 111101 | 611305 ~ 617762 (+) | True | CI01000009_00611583_00617762 |
| CI01000009_00608513_00609159.mRNA | mRNA | upstream | 119488 | 608513 ~ 609375 (+) | True | CI01000009_00608513_00609159 |
| CI01000009_00805606_00808374.mRNA | mRNA | downstream | 75084 | 804904 ~ 808404 (+) | True | CI01000009_00805606_00808374 |
| CI01000009_00852319_00853083.mRNA | mRNA | downstream | 121422 | 851242 ~ 853461 (+) | True | CI01000009_00852319_00853083 |
| CI01000009_00913995_00916434.mRNA | mRNA | downstream | 184175 | 913995 ~ 916565 (+) | True | CI01000009_00913995_00916434 |
| CI01000009_00920570_00955979.mRNA | mRNA | downstream | 190608 | 920428 ~ 956574 (+) | True | CI01000009_00920570_00955979 |
| CI01000009_01034561_01035452.mRNA | mRNA | downstream | 304741 | 1034561 ~ 1035728 (+) | True | CI01000009_01034561_01035452 |
| TU57430 | other | upstream | 633076 | 94202 ~ 94283 (+) | True | G50472 |
| TU57948 | other | downstream | 40021 | 769841 ~ 770233 (+) | True | G50920 |
| TU57959 | other | downstream | 693027 | 1422847 ~ 1438355 (+) | True | G50926 |
| TU58233 | other | downstream | 950326 | 1680146 ~ 1681966 (+) | True | G51122 |
| TU58306 | other | downstream | 1164415 | 1894235 ~ 1894364 (+) | True | G51182 |
| TU58428 | other | downstream | 1525279 | 2255099 ~ 2350486 (+) | True | G51274 |
