CI01000009_00920570_00955979 (TBC1D4)


Basic Information

Item Value
gene id CI01000009_00920570_00955979
gene name TBC1D4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 920428 ~ 956574 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00920570_00955979.mRNA
CCATTAAAGCGCCAGGAGATGTTTCCAGCTGCTTTCACATAATAATGACCGGTGCATGTATGTAGTTAGGCATTTAGTGGTGTAAAGGCATAGAGTTGTTGCACAAAGCAACTAAAGTCTTTGTCCCGGAGCCCTTGGAGAGATGGAGGGACAGGATGGCAAAGGGATTCATAATAATGACAGTAATCAAAAGGCAGAGAAGAGGTTTGCGCTCTGTTACATGGGCTGGTCGTCTCTGGACAGGCGAACCACGCTGCCCATGCTGCCGTGGCTGGTGGCGGAGATCCGGAGAAAAAGTGAAAAGAACGAGTCCGGTCCCGCACAGGCCAGAGAAGTTCAGCTGTGTCTCTCGTCCACTCTGATCCGCTGCGTGCCCGCAAACAGCAGCAACCCGTCCGTGTTCATATTCGAGCACAAAGCACAGTTTATATCCAGGTTTATCCATAATAGTCATGACCTGTCTTATTTTGCCTACCTTATCAGAAGTCAGCCAGAGAACCCAGAGTCTGAGATGGCATGCCATGTGTTCAAAGCATGTGATCCAAATCAGGTGCCTGAGGTTATTAGCAGCATTAGACAGGTGTCCAAGGCTGCACTTAAGGAGGAAAGCAAGCCCAAGCAAGAGAGTGACGAGTCTTTCTACAACTCCCAAAAGTTCGAAGTACTTTACTGTGGAAAAGTGACTGTCAACCACAAGAAAGCCCCTTCCACTCTAATTGACGACTGCATTGACAAATTCCGCCAACACGAGCTTGAACGCAAGCGTCTGCGGCTCCTCAATGGCCAGCGTAGCTCCACCGAGGCCCCCGTAGAGTTCATCATGGGCGATGACCCTCTAAGCTCCTCCCTCTGCGAAGTTGACGAACCTGAGGCAGAACCCAGCTCGACTGAGGAAGAGCTGTCTGAGTTGGGCAATGGGAAACTGACTAGCTCTTCCAGTACAGGCAGCCTGCGAGGGGCCTTTCCTGAGTGCATTTTGGAGGACTCTGGTTTTGGGGAGCAGCAGGAGATTCGTACGCGCTGTAATAGCCTGGCGGGTGGCCTGCAGAAAAAACCCAGAGAGGCAGGCAAGGGGTCAACGCGTAGGAGACACGCTAGCGCGCCCAATAACGTGCAGCCGTCTGATGCTGATAAGAATCGCACAATGCTGTTCCAGCAAAATATGCTATCAAACGGCTCATTTGTGCAGGTTGGACGGTTTGAAGTGAATCTCATCAGCCCTGACACCAAAACTGTGGTTCTGGAGAAGAATTTTAAGGACATCTCATCCTGTTCACAGGGTGTTAAACAGACAGATCACTTTGGCTTTATTTGTCGGGATGTGGTGGAGTCTGGCCCAGCCCAGTATGTGTGTTACGTGTTCCAGTGTGCTAGTGAGTCTCTGGTGGATGAAGTAATGCTCACCCTGAAACAAGCTTTTAGCACGGCAGCAGCTATGCAGAGCTCCAAGAACCAAGTCAAACTGTGCGAGGATTGTCCAATGCACGACTTGCACAAGCTCTGTGAGAGAATAGAAGGCTTGTATCCTCCCAGGGCAAAACTAGCCATTCAGAAGTACCTGTCCCAACTGAGCGACAATGAGCAGGTCAACATATTCGAAAGGGTGCAGAAAATGAAGCCAGCATCTGATCATGAAGAAAACGAGCTTGTGATTCTTCACCTCCGACAGTTGTGTGAGACCAAGCAGAAATCTCATGTTCATATTGGAGAGGTCCCACAGGGAGCCAACCGTATGCGAATGCGTTTGGGCAGCATGGGAAGTTTTGACCGCGGCGACTCTCCTGGTGACTCCCCACCTGAGACTCCACCCAGTTACCTTGAGGACGACCCAGATGCCCCGCAGTTCCGTCGCCGGGCTCACACCTTCAGCCACCCGCCTATCAAGAAAAGGATCTCCTTCACTGAGGTTTCCTCCCAGGCCTGTAAGGCTCCACTTCGCCGACAGCAGTCTTTGGCCCCAGAGCTGCTGCAGAGCAGCACCGTTGGTAGTACAAGAGCGCGCAGCGTCTCTGAGAGTGACTCCTACTTCAGTCTCTCATCCTCCTTCCACACCCCCACTTTCCTGAAAACCTTTTACCAGGGCTCCCTTGGCTCATTGGCTTCCCTGTCGGACAGCGGGAGTCTTAAGAGTGGTAATGGGGAGGGCAGGAAGAGGTCTCTGTCAGGTTGTAGCACCGATTCTTTGACCTTGGTGCCTCCACGCAGAGTTTCTTGGCGGCAGAAGATTTTCTTGAGGGTGGCGTCACCCATGAACAAACCCTCCACATCTATGCAAAACGTGGAGCACATGGATGGCCGGGAGCTGCTGCCACTTTCTCCTCGGGCTTTGAAACAGGATCAAGACCCTCAGGCCAGCCCCCTCTCCCCAGAGCAGGGCTTTGGTGGAGAGAAGGGCCGGCGCAGCCCAGCTGACTACAGGGCCCTGTGGAAGAAAGCCATCCACCAACAGATTTTGCTCATCCGCATGGAGAAAGAGAATCAGCGCCTGGAGGCCAGCCGTGATGAATTGCACATTCGTAAAATGAAGCTGGACTACCAGGAAGTGTGTCAGTGCTCCAAAGAGGTGCAGGCTGTGTGGGACAGGAAGTTGAGCAGCCCCTGCCGCACTAAAGTACAGTGGGATAAAGAAGAGATTCACAGTGCCGTCTGCCAGGGTGTCCCCAAAAGTCGGCGAGGTGAGGTGTGGCTCCTCCTTTCCCAGCAGTATCGTCTGCGTCACCGTCTGCCGCAGCGGCAGCAGCCCCCTGAAACTCCTTATCAGGATCTCCTCAAGCAGCTCACAGCACAGCAACACGCCATCCTGGTCGACCTTGGCCGGACATTCCCAACACACCAGTATTTCAGTGCTCAGCTGGGAGCTGGGCAACTGTCTCTGTACAATCTCCTAAAGGCCTACTCCCTGCTGGACACGGAGGTGGGCTACTGCCAGGGCATCAGTTTTGTGGCCGGTTTGCTACTGTTGCATATGAGCGAGGAACAGGCTTTCGACACTCTTAAGTTCCTCATGTACGATCTGGGTATTCGCCGGCAGTACCGTCCCGACATGATCTCCCTGCAGATCCAGATGTACCAGCTGTCCCGACTGCTGCACGACTATCACCGTAACCTGTACACTCACCTGGAGGAGCACGAGATCTGCCCCAGCCTGTACGCCGCACCCTGGTTCCTCACTCTCTTCGCCTCTCAGTTCCCGCTTGGTTTTGTTGCCCGTATATTTGACCTCCTGTTTGTCCAAGGCACTGAGGTGATTTTTAAGGTGGCCCTTTGTTTGCTGAGCAGCCACGAGGGAGAGATACTGGAGTGTGACGGCTTTGAAAGTATCGTGGACTACCTTAAATCCACAATCCCCACCCTCACTTACAGCCAAATGGAAGAGACAATCACCAAGGCGACTGAGATGGACATCTCCAAGCAGCTGCACGCATATGAAGTGGAGTACCACGTCCTGCAGGATGAGCTGTCAGACGCTCCTCCACCATCAGAGGAGTCTGATAGGCTAGATAAACTGGAAAAAGCCAATGCCCAGCTCAAGAAACAGAACATGGACTTGCTAGAGAAACTGCAAGCGGCTCGTTTGAAGATTCAGACATTGGAGAGCAGCGTGGAGAGCTTCCTGTCACGAGAGAGCAAGATGAAGCACTTGATCCGTTCTCTGGAACAGGAGAAAGCTTCCTACCAGAAGACCATTGAGCGCATGCGTAGCAGTTTACCATCAGATGCCATGACTGATGTGGAGATGACACAACTCAAGTCCAGCACCAATGGGAAAGCCAAAGCTGCCTGTAAAAAGCCTTGAATCACAATCCTACTGACTGATGCATCATATAGGTACATCAGTAGTGTTACTCTGCTTATTCCTCTAGGTTCCCATCGTGCTTCACCTTTGATGGCCTACATCTTTACATTTGAGAAATGGGAACGTTTGACACCTTGCGACCGCACTAAAAAAACTTGAAAACAATAAGGAAGCGTTTCCTTTCCAAAGAGCAGCATGACTAGTCCGCGTACGTGGCGTGTTGCATTCATTTCCACATGTGACTTTATGCTCACTGTGAAGGTTTTTTTCACCTGGCACTCCAAACCTGGAGTTTGGAGGAAACCAAATATTTACCAGGTCGACCTTTTGCTTAAAGTGCTTCACCTAAAGTGCAGGCAGGAAGTGAAACCATCTGCTGCTGGGTTTCCTCTGCAACTTACAAACAGTCTGGCTGTCCAGAATCCCCAGTTTGAGCTCATGGGCTTCAAGCGAGTTACTGTCTGAAGACATGAAGAGTTACTTGTCTTTAAACCATCACCTTTGATAATGCACAGTATTCTGTGTGTGAAGTGAAGAAGTATGCCTGAAAAACGTGTTGGATACTATGCCATAAAGATATGTGCATGTAATCATA

Function

symbol description
tbc1d4 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in myotome; pancreatic bud; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in acanthosis nigricans. Orthologous to human TBC1D4 (TBC1 domain family member 4).

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K17902 TBC1D4, AS160; TBC1 domain family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00920570_00955979.mRNA True 4391 mRNA 0.51 19 920428 956574

Neighbor

gene id symbol gene type direction distance location
CI01000009_00913995_00916434 COMMD6 coding upstream 3863 913995 ~ 916565 (+)
CI01000009_00852319_00853083 CX45.6 coding upstream 66967 851242 ~ 853461 (+)
CI01000009_00805606_00808374 NA coding upstream 112024 804904 ~ 808404 (+)
CI01000009_00719164_00724772 SRPX coding upstream 195377 719164 ~ 725051 (+)
CI01000009_00704243_00710805 NA coding upstream 209623 704065 ~ 710805 (+)
CI01000009_01034561_01035452 KLF12 coding downstream 77987 1034561 ~ 1035728 (+)
CI01000009_01110684_01111118 NA coding downstream 154110 1110684 ~ 1111601 (+)
CI01000009_01183737_01206031 NA coding downstream 225517 1182091 ~ 1206857 (+)
CI01000009_01219880_01224537 NA coding downstream 263063 1219637 ~ 1224869 (+)
CI01000009_01351236_01380055 CLYBL coding downstream 394662 1351236 ~ 1380285 (+)
G50933 NA non-coding upstream 11447 905332 ~ 908981 (+)
G51001 NA non-coding upstream 25557 894655 ~ 894871 (+)
G50954 NA non-coding upstream 39107 878271 ~ 881321 (+)
G50947 NA non-coding upstream 43007 874102 ~ 877421 (+)
G50984 NA non-coding upstream 79509 837940 ~ 840919 (+)
G51017 NA non-coding downstream 17137 973711 ~ 973959 (+)
G51028 NA non-coding downstream 39470 996044 ~ 996272 (+)
G51031 NA non-coding downstream 44422 1000996 ~ 1001222 (+)
G50951 NA non-coding downstream 146704 1103278 ~ 1104484 (+)
G50972 NA non-coding downstream 148054 1104628 ~ 1105292 (+)
G50920 NA other upstream 150195 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 824641 94371 ~ 97230 (+)
CI01000009_01431700_01434463 NA other downstream 466273 1429873 ~ 1435328 (+)
G51122 NA other downstream 723572 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 937661 1897343 ~ 1919516 (+)
G51274 NA other downstream 1298525 2255099 ~ 2350486 (+)
G51529 NA other downstream 2105459 3062033 ~ 3062587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location