Gene
RNA
| Item | Value |
|---|---|
| gene id | G50951 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 1103278 ~ 1104484 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58021 | True | 1207 | lncRNA | 0.34 | 1 | 1103278 | 1104484 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_01034561_01035452 | KLF12 | coding | upstream | 67550 | 1034561 ~ 1035728 (+) |
| CI01000009_00920570_00955979 | TBC1D4 | coding | upstream | 146704 | 920428 ~ 956574 (+) |
| CI01000009_00913995_00916434 | COMMD6 | coding | upstream | 186713 | 913995 ~ 916565 (+) |
| CI01000009_00852319_00853083 | CX45.6 | coding | upstream | 249817 | 851242 ~ 853461 (+) |
| CI01000009_00805606_00808374 | NA | coding | upstream | 294874 | 804904 ~ 808404 (+) |
| CI01000009_01110684_01111118 | NA | coding | downstream | 6200 | 1110684 ~ 1111601 (+) |
| CI01000009_01183737_01206031 | NA | coding | downstream | 77607 | 1182091 ~ 1206857 (+) |
| CI01000009_01219880_01224537 | NA | coding | downstream | 115153 | 1219637 ~ 1224869 (+) |
| CI01000009_01351236_01380055 | CLYBL | coding | downstream | 246752 | 1351236 ~ 1380285 (+) |
| CI01000009_01402330_01407372 | ZIC2A, ZIC2 | coding | downstream | 296577 | 1401061 ~ 1407755 (+) |
| G51031 | NA | non-coding | upstream | 102056 | 1000996 ~ 1001222 (+) |
| G51028 | NA | non-coding | upstream | 107006 | 996044 ~ 996272 (+) |
| G51017 | NA | non-coding | upstream | 129319 | 973711 ~ 973959 (+) |
| G50933 | NA | non-coding | upstream | 194297 | 905332 ~ 908981 (+) |
| G51001 | NA | non-coding | upstream | 208407 | 894655 ~ 894871 (+) |
| G50972 | NA | non-coding | downstream | 144 | 1104628 ~ 1105292 (+) |
| G50961 | NA | non-coding | downstream | 107066 | 1211550 ~ 1217229 (+) |
| G51036 | NA | non-coding | downstream | 180376 | 1284860 ~ 1285420 (+) |
| G51039 | NA | non-coding | downstream | 183716 | 1288200 ~ 1288672 (+) |
| G51041 | NA | non-coding | downstream | 186059 | 1290543 ~ 1290776 (+) |
| G50920 | NA | other | upstream | 333045 | 769841 ~ 770233 (+) |
| CI01000009_00094836_00095813 | NA | other | upstream | 1007491 | 94371 ~ 97230 (+) |
| CI01000009_01431700_01434463 | NA | other | downstream | 318363 | 1429873 ~ 1435328 (+) |
| G51122 | NA | other | downstream | 575662 | 1680146 ~ 1681966 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | downstream | 789751 | 1897343 ~ 1919516 (+) |
| G51274 | NA | other | downstream | 1150615 | 2255099 ~ 2350486 (+) |
| G51529 | NA | other | downstream | 1957549 | 3062033 ~ 3062587 (+) |
