Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000013 |
| length | 827 |
| lncRNA type | retained_intron |
| GC content | 0.56 |
| exon number | 6 |
| gene id | XLOC_000004 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 27690 ~ 34330 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006325 | chromatin organization | biological_process |
| GO:0006342 | chromatin silencing | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0016571 | histone methylation | biological_process |
| GO:0035098 | ESC/E(Z) complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031491 | nucleosome binding | molecular_function |
| GO:0046976 | histone methyltransferase activity (H3-K27 specific) | molecular_function |
| GO:0042054 | histone methyltransferase activity | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-050417-287 | Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development). |
| ensembl_id | ENSDART00000166052 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003000 | lncRNA | upstream | 7483 | 18716 ~ 20331 (+) | False | XLOC_000002 |
| TCONS_00000009 | lncRNA | upstream | 7483 | 18747 ~ 20331 (+) | False | XLOC_000002 |
| TCONS_00000007 | lncRNA | upstream | 7851 | 18716 ~ 19963 (+) | False | XLOC_000002 |
| TCONS_00000004 | lncRNA | upstream | 12751 | 14167 ~ 15063 (+) | False | XLOC_000001 |
| TCONS_00000017 | lncRNA | downstream | 4822 | 36727 ~ 38446 (+) | True | XLOC_000005 |
| TCONS_00000021 | lncRNA | downstream | 95361 | 127266 ~ 133215 (+) | False | XLOC_000008 |
| TCONS_00000022 | lncRNA | downstream | 95395 | 127300 ~ 129591 (+) | False | XLOC_000008 |
| TCONS_00000023 | lncRNA | downstream | 98722 | 130627 ~ 131221 (+) | True | XLOC_000008 |
| TCONS_00003002 | lncRNA | downstream | 124887 | 156792 ~ 157282 (+) | True | XLOC_000011 |
| TCONS_00000011 | mRNA | upstream | 559 | 25585 ~ 27255 (+) | True | XLOC_000003 |
| TCONS_00000008 | mRNA | upstream | 4425 | 18716 ~ 23389 (+) | False | XLOC_000002 |
| TCONS_00000010 | mRNA | upstream | 4641 | 18786 ~ 23173 (+) | True | XLOC_000002 |
| TCONS_00000001 | mRNA | upstream | 11441 | 11822 ~ 16373 (+) | False | XLOC_000001 |
| TCONS_00000016 | mRNA | downstream | 4647 | 36552 ~ 39191 (+) | False | XLOC_000005 |
| TCONS_00000018 | mRNA | downstream | 77893 | 109798 ~ 119146 (+) | True | XLOC_000006 |
| TCONS_00000019 | mRNA | downstream | 88055 | 119960 ~ 125246 (+) | True | XLOC_000007 |
| TCONS_00000020 | mRNA | downstream | 95345 | 127250 ~ 134079 (+) | False | XLOC_000008 |
| TCONS_00000024 | mRNA | downstream | 103998 | 135903 ~ 142469 (+) | True | XLOC_000009 |
| TCONS_00000003 | other | upstream | 14557 | 12129 ~ 13257 (+) | False | XLOC_000001 |
| TCONS_00000036 | other | downstream | 228135 | 260040 ~ 293894 (+) | False | XLOC_000017 |
| TCONS_00000047 | other | downstream | 482108 | 514013 ~ 515322 (+) | True | XLOC_000021 |
| TCONS_00000052 | other | downstream | 505684 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000053 | other | downstream | 544539 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000060 | other | downstream | 1186786 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
