RNA id: TU62444


Basic Information

Item Value
RNA id TU62444
length 266
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G54877
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7116374 ~ 7116639 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGATTTACTGATACAGCTTATGTTAGGCATCCTATCAGGGAGCTCATGATTGTGCATGTGAGTGTGTGCATGTGTGTGTGTGTATATGTAAACGTGCATCTGAATGTCACCACCTGGCACGAATCACGCGGGCCCCACGATTTGATAGACCCACAACAGGTGTGTGGAGGCACAGCAAACACCCTTGACTCCTGACAGGTGTTGAAGTTTGGGTTTCAGCCCAGACTGCGCTGCATTTGCTTGTGACACTCACATTAGTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62411 lncRNA downstream 154202 6961953 ~ 6962172 (-) True G54849
TU62401 lncRNA downstream 163185 6952942 ~ 6953189 (-) True G54839
TU62398 lncRNA downstream 164951 6951207 ~ 6951423 (-) True G54836
TU62028 lncRNA downstream 468083 6648087 ~ 6648291 (-) True G54499
TU62017 lncRNA downstream 483374 6632801 ~ 6633000 (-) True G54488
TU62445 lncRNA upstream 1889 7118528 ~ 7118767 (-) True G54878
TU62454 lncRNA upstream 10723 7127362 ~ 7127584 (-) True G54887
TU62467 lncRNA upstream 25090 7141729 ~ 7141964 (-) True G54900
TU62484 lncRNA upstream 40132 7156771 ~ 7157175 (-) True G54917
TU62686 lncRNA upstream 54458 7171097 ~ 7171518 (-) True G55110
CI01000009_07064060_07084764.mRNA mRNA downstream 31156 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07020336_07047155.mRNA mRNA downstream 68197 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_06913437_06917631.mRNA mRNA downstream 198743 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_06891877_06908223.mRNA mRNA downstream 208151 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06253421_06255264.mRNA mRNA downstream 860428 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_07224625_07229839.mRNA mRNA upstream 107677 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07383927_07391805.mRNA mRNA upstream 267015 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07500752_07541007.mRNA mRNA upstream 383963 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
CI01000009_07625693_07637462.mRNA mRNA upstream 508915 7625554 ~ 7637462 (-) True CI01000009_07625693_07637462
CI01000009_07953250_07953748.mRNA mRNA upstream 836079 7952718 ~ 7954139 (-) True CI01000009_07953250_07953748
TU60944 other downstream 1611126 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2884905 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3854417 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4216967 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4553841 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1309182 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1741513 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5171578 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5171578 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 6858749 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile