RNA id: TU62454


Basic Information

Item Value
RNA id TU62454
length 223
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G54887
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7127362 ~ 7127584 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGACATTTGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACTGCGCAGATCATAATCAGCGAGCTTTCAAATCATAAGATCATAAGATCACACCCTCCCTTCAGAGCGTCTCAAAGGCCACGCCTCCTCTAAAACGCACGATTAACGTGCTCGCGCACAACTGCTCTTGGCAAAGCGTCACAAGAAACTGCGTTAAACTGCCTCACGTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62445 lncRNA downstream 8595 7118528 ~ 7118767 (-) True G54878
TU62444 lncRNA downstream 10723 7116374 ~ 7116639 (-) True G54877
TU62411 lncRNA downstream 165190 6961953 ~ 6962172 (-) True G54849
TU62401 lncRNA downstream 174173 6952942 ~ 6953189 (-) True G54839
TU62398 lncRNA downstream 175939 6951207 ~ 6951423 (-) True G54836
TU62467 lncRNA upstream 14145 7141729 ~ 7141964 (-) True G54900
TU62484 lncRNA upstream 29187 7156771 ~ 7157175 (-) True G54917
TU62686 lncRNA upstream 43513 7171097 ~ 7171518 (-) True G55110
TU62697 lncRNA upstream 55298 7182882 ~ 7183239 (-) True G55121
TU62719 lncRNA upstream 84348 7211932 ~ 7212295 (-) True G55143
CI01000009_07064060_07084764.mRNA mRNA downstream 42144 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_07020336_07047155.mRNA mRNA downstream 79185 7020315 ~ 7048177 (-) True CI01000009_07020336_07047155
CI01000009_06913437_06917631.mRNA mRNA downstream 209731 6912470 ~ 6917631 (-) True CI01000009_06913437_06917631
CI01000009_06891877_06908223.mRNA mRNA downstream 219139 6891241 ~ 6908223 (-) True CI01000009_06891877_06908223
CI01000009_06253421_06255264.mRNA mRNA downstream 871416 6253421 ~ 6255946 (-) True CI01000009_06253421_06255264
CI01000009_07224625_07229839.mRNA mRNA upstream 96732 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07383927_07391805.mRNA mRNA upstream 256070 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07500752_07541007.mRNA mRNA upstream 373018 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
CI01000009_07625693_07637462.mRNA mRNA upstream 497970 7625554 ~ 7637462 (-) True CI01000009_07625693_07637462
CI01000009_07953250_07953748.mRNA mRNA upstream 825134 7952718 ~ 7954139 (-) True CI01000009_07953250_07953748
TU60944 other downstream 1622114 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 2895893 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 3865405 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 4227955 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 4564829 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 1298237 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 1730568 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 5160633 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 5160633 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 6847804 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile