RNA id: CI01000012_07368295_07372257.mRNA


Basic Information

Item Value
RNA id CI01000012_07368295_07372257.mRNA
length 1052
RNA type mRNA
GC content 0.50
exon number 9
gene id CI01000012_07368295_07372257
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7368295 ~ 7372257 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGGAGATTTGTGGTCAACCAGAGACAAATCTCCACCATGGATGCATTGCTTAATGATATCACTCTCAGTATTGGAGCGCCGTTGGCTGTTCGAAATCTCTATACGCCACGATACGGCCACCGGGTCACGGACCTCACTGACCTACAGCAAGGGGCACAGTATGTGGCTGCAGGGTTTGAGCGTTTTAAGAAACTGGATTATCTGAGTGCAGGATTGAAGAAAGGTCCAATGTTCAGAGCTGTGGAGCCAACACAGGCTAAAGCACTTGTCAGGCCTAATGTTTCTGCAAAATGGAGGAAGGTCATTACTCTGCCCTGCATCATACATGTATTTAGGAACGGGGACATCCTCAGTCCTGCCATGCGTCTGATCATTCCCAGACACATGCAGAAAAATCTAGAGCAGATCCTGAGCCTCATTTCGGAAAAAGCCATGCTTCGCACAGGAGCTGTGCGCAGGCTCTGTACTCTGGAGGGCTTCACGGTGACCTCCACAGACGAGCTGGAGTCTGGGCAATGCTATGTTGCTGTTGGAACAGAGAGGTTCAAGAAACTCCCATATGTGGAGATACTGCTAAACAAAGCAACAGGCAGCAGCGCGGACAGTTCGTTATTGTTCTCTTATGATGATCCGACTCAGAGTAGAAAGATTTTTCCCCAGGACAGCCACAGTGACTCCACCCTCCTGAATTCACCTGAGAGGGAAGGTAGGCGTGTGAAGTCCACAGGAGATGAGGTGGAGCGAGAGAGCTCCCCTCGGCTGGTTAAGAGGAGAGGAAGGAGAGGAGAAAGAGAAGAGAACTCTGTTTTCTACGCCAGACCTGTGAGAGTTCGCAGACACCCACCCACACACAGACCTCCACCTAAAGCTGCAACAGATAAACACAGTGTGTTTAAGGCCTCTGAGAGGGAGGAGGTTCGAGGTGCTGAGGAGGTCGCAGAGGATGAAAACACAGCTGTAGAGCTTCCCATTGACCAGAGAGAAGCAGATATTGTGGAGGATGAAGAGCTTCCTGAAAGAGATCAATTTGACCCAGCCAGTACAAATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84528 lncRNA downstream 22511 7345481 ~ 7345784 (-) True G74113
TU84545 lncRNA downstream 30110 7334138 ~ 7338185 (-) True G74130
TU84519 lncRNA downstream 52060 7312027 ~ 7314714 (-) True G74104
TU84552 lncRNA downstream 100020 7266989 ~ 7268275 (-) True G74137
TU84727 lncRNA downstream 104270 7263770 ~ 7264025 (-) True G74296
TU84819 lncRNA upstream 191465 7563722 ~ 7563999 (-) True G74363
TU84837 lncRNA upstream 225656 7597913 ~ 7598119 (-) True G74376
TU84839 lncRNA upstream 228884 7601141 ~ 7601382 (-) True G74378
TU84843 lncRNA upstream 321119 7693376 ~ 7694697 (-) True G74381
TU84945 lncRNA upstream 461105 7833362 ~ 7836466 (-) True G74477
CI01000012_07366635_07367888.mRNA mRNA downstream 407 7366480 ~ 7367888 (-) True CI01000012_07366635_07367888
CI01000012_07356934_07358497.mRNA mRNA downstream 9683 7356863 ~ 7358612 (-) False CI01000012_07356934_07358497
CI01000012_07322669_07329009.mRNA mRNA downstream 38783 7322633 ~ 7329512 (-) True CI01000012_07322669_07329009
CI01000012_07316139_07320354.mRNA mRNA downstream 47102 7316030 ~ 7321193 (-) False CI01000012_07316139_07320354
CI01000012_07268516_07270856.mRNA mRNA downstream 97439 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07374223_07375676.mRNA mRNA upstream 1790 7374047 ~ 7375676 (-) True CI01000012_07374223_07375676
CI01000012_07379927_07381734.mRNA mRNA upstream 6277 7378534 ~ 7381734 (-) True CI01000012_07379927_07381734
CI01000012_07388341_07401600.mRNA mRNA upstream 16084 7388341 ~ 7401756 (-) True CI01000012_07388341_07401600
CI01000012_07406125_07408361.mRNA mRNA upstream 33858 7406115 ~ 7408361 (-) True CI01000012_07406125_07408361
CI01000012_07504355_07506926.mRNA mRNA upstream 131203 7503460 ~ 7506926 (-) True CI01000012_07504355_07506926
TU84502 other downstream 9750 7355252 ~ 7355377 (-) True G74087
TU82841 other downstream 1220801 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1902438 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1951515 5363642 ~ 5364083 (-) False G72235
TU85146 other upstream 892072 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 994762 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 994824 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 994824 8367081 ~ 8367643 (-) True G74701
TU85328 other upstream 1695649 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012062 False 1712 mRNA 0.48 14 NC_007124.7 33304187 ~ 33314758 (+)
bowfin (Amia calva) AMCG00011028 True 1182 mRNA 0.53 10 CM030133.1 8070846 ~ 8077484 (-)