RNA id: TU84519



Basic Information


Item Value
RNA id TU84519
length 2688
lncRNA type read_through
GC content 0.42
exon number 1
gene id G74104
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7312027 ~ 7314714 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGATGAATAGAAACAAATATTTTATGATTTTTCAGGTCACTCAGCATCAAGCTGTCAACAAATAACCATTAAACAAGACAGAGGAAAAGCTGTCTAGTTTCAAGTGCAAACTGCCCCACTTTACACAGGCAGATTATGAATAATTAGAAAGAAAATATGCTTAAATTAAAGTATGTGTTTTAAAACACTGTGTTTAAAGAAATAAATAAGAACGGGCAGCATTCCATTATATATGAGACAAAAATAAAATCAGATCAGAGGGCATTGTTTCTCCTCCTCTAGTAGTATCTTGTAGCTATTGTGAATGAAGGCAATTATTTGAGAAAAAAATCCCCCTGCTGTCTTTTCATTAATGGATCAGTCTGAGTACTCATGCATAAAATATCAGCTCCGGAATCTGTCCCCCCTGCACCCCTGTCCCATTAGTACTATCAGAGGAACACTGAAACTGGAAGGTGACTTTCCCACACTGGACTTCTGTCATTCCTTCCTGTCCAAAATAACTTAGCTCGCTCCCATCAAGAACGGCGCTAACCGTGTAGAACGCATCCTGCTCCACCTGTAGTGGGTGCTCGAACCACACAGGGAACGTTGAGCTAGAACCATCCGACACAAATTTGGTCAAGTTTTGTGCCAGAAGCACTCCCTGTCTCTTTAGTTCAATTCTGACGCTATATTCCGCCTTCCCTCCACTGGAGCCGTACAGACCAAGTCCGGCGATAAACACTCGCTTGTCCACGGCGAACTGGATGCTGTCACAGCGTCCGCGGTAGCGCCACTGGTTGCTTCGGTAGGCGGATGACTGGAACCGGTGACAGCGTTGCGGCGCCAGCCCCTTTCTGGATGCAACCGGGAATCCCAGTGAAGGTTTCGTAGCAGCTGTGTACCAGAGAAAGATGTTGTGTGTTTCCTCAAGGGTTAAAATGTTCGACTGCGCCGCTCCGTCTGCAAATTCCTGCAGTGTCATGGAGGGCAGGCGCACAAGGTGCAATGCCTTTCCCAGCACAGAGCGCTGGTTCTGTGACGTGAGGCTTAAGCCTTGTCTCCGACACTCTGCATCGGCCCATCCCAGGACAGCCTGGAACACCACCGCCTCCTTCACGTTCAGCGTCTCTCTGTGTAAAATGCTTTCCAGTGTGGGCAGGTCAATCTCAGAGAAACCTTCGGAGCGCAGCGCAAGTTCTGCCTGGGCGTCGATCACTTCCCAGCATCTCTGAGTGAGCTCTGGCTCCTCAAACAGACGACTCTGAGATAGCAGCACGCACGCATTTCGGGCCGCCAGGCTCGTCTCGAGGAAACCCACACATGCGCGAGCCAGAGCAGACACCAGGTATTTTTTGGCAGCGTAGAGCGTAGCTAGAACTGTGTCGGCCGACAGCTCTATTTCATCACTGTACATGTATCTGGTAAAGAAGAGGAAGATAGAGAGGTTAGGGTAAACTTTAAAGTCTGCATGAAAAAGAAGTTGCGATTGTCTTTTAAAAGTAATGCATTACAATATTGCGTTACTCCCTAAAAAAAGTAACTAATTGTGTTACTCAGTTACTTAAAAGTAATGCATTACATTACTTTTGCGTTCTCACCTGGGCTGAGCTTGCTTGTTTGTTTTTAATAACAACAACAAAAAAATGGCGAATGTTAAGGCCCTTTCACACCAAAAGTGAAATGAATAAGCCTTAGGCTGAAGGAAAAGCATATTTACGCCTGTACAGTAGAGGGCGCAGCTCAAACAAACCTTTCAGCTGTGCTGCCATTCGGGAAAGTAATTTTTGCTTATTAGTATGGTTAAATTAGATCATTGAAGGTCAGCAGCAAAGATATTGGTTAATAAAGTAAGATTAAATACATAAAGTACATTTGTGTAATTTAATATAGTTTATTACAGGTTTGCCTTAAATTCTGAGATTGCATTTCACTGTTTTTATTCATTTTGAGGAATACTGAATGTTTTCGTGCAAGTGAGATGAGTAAATGCATGTTCACATTTAGCCTAGAACTACAATAACCATCATGTTCTACACTTTATTTCTCTCAACATGGCGACAGGAGAGCTGTCAGTCAATAAATGTGAAAAAGTAACTATTTTAAAGTAGATATGTTGTTGTGAATTGAAAAAGTAATGTGTTACTAGTTACTTGAAAAAAGTAATCTTATACGTAACTCAAGTTACTTGTAATGCGTTACCCTAACACTGGTGACGTATATATGAGTGAAATGGCTTCTCGAAAGAGGAAAAAAATGTAGGGTGGGACTTAATTCTGTCCATCGGGAATTGATTGGATCATTGAATCAGTATCAGTTTGCAATTGCAATCTCTTCTGAGTGACAGGTTGTTCGGCTCTTGTGTCAGTAAACACGTCATCAGAGAAGAGATGTTGTTTTAAGGGGGAGGGGAAGTTATTTTGAATAAAGAATTAAACATGAATTAAAAAATATATAAGGACATGCACAGATAAATAATTTATAATAAACACAAAATTGTCCATTTTGAGTGCAGAGATGTTCTTCCATACGAAGAGAATAAAACTGCTAGTTCATACTTCACTAAAGCTGGTCTGTTTAACATGATCTTTTATTGCATTGCTACTGCTTTAAATAGTGACTTCCAACTTTCCCAGGGAAAAAGCACATCATTCGCATTCACAATCCAATAAACGATCTAATAGCTCTGAAATAAGAGGGCGACTCTTAAACCAAGACATCACTGTCAAAGTCTCTGTGAACCCATCTGTGCTGCTTGGCATGAAAGCTGAGTCGCCCTGTTATTAATGCCCGGATGTGATTAGTGAGTGAGTCTTACTTGAGCAGGATGAGAAACGCAGCGGGTTCCACATCTGGAATATGGATATCAGAGTCCCCTTCCGCGAGATCCCCATAAAACATGGCACAGAAAACGGAGCTCCCCACTGCCAGCACATACTGAGAAAGAAAGAAGAGAGGATCCGTCAGTGTTTTATCTAGTCCTTTCCCAAGCATTTCCTGGATGTCTCCCTTATCTGACACCTATTTCAGATCCACTGATAAGCTGTTGGGTCAAATCAGGTTTGTTAGATTTGGGAGACATCCAAAATATGTTGTGGTTATTGTAGAGGGAGAGGTGTGTGTGGACTCACCTTGTGTGCCGGGACCCTTTCCGATTCGCCGGGTGGACCAACAATGAAATGAACATCTGCCATGTGTTCATTATTGAACATTAGTGCATTTCTGCATAAAGTAAAAAATAAATACATTTAGCCTTGGTGTTAATAAATAAACAAATAAAGCACATTTAATTTGAAAGAAAATAATGTAATATTATATTATTTAATTGATGTTAAGATATTAAGTGTCTTTTCACTTATTTTTAAATAACTTGCCTTAATACTGTACAAATGTAATAAAAAACTAATTTAATACATATTCAGACATTATATCACTTGATTTAATGTCTTGCCTTTCTCGTAACGTCGGGTGCGCGGAGTGCCAGCTGGGAATCTCCACGTTGTTGTTGTTGATGTTTTGCTCTGTGTTTGGTGTGGTGGCGATGGACGCGGTGGTCTGCGCAACCGGCTCTGCGCTCTTCTTCTCTGACAGACTCAGCATCACGGTCCCGTTCTTCTGCACTGTGGCGTGATCGTTCACGGGGTACAGTTCCGCTGCCATCCTTTTCTTCAGGGAGAGAGTTAAGATGTTATAGCACACAGACAGCCTGCCGGGGTGCTTGCTTGCCCGCTTCAACTTCTTTAACGTTTCGGGGAGCAAGAGTAAAAAAGTCACGCATTTCATGATCCGGCCATGATGGGACAGCCTGCATTCCGGCGCAGCGGGCATCAGAACAAAAAAGAAAAGTTTTTGTTTTGTATTAAAAAAAAACTATCAGCTACAACCGTGGTCCGTGATATTCCCAAGTAATATTGCGTAGTTTCCTTGGAAACAAAAACCGCTCCACTGTCCTTAAATGGGCACGTAAATATTTGGGAATTCAAGGATTATTTCATAGATATGCCATCCTCTTTTCCCTAATCACATAACGTTACTCTCCCATCCTATACCGAAAATCCAATCCAAATCCGTTTAAAATCACTTAGGAATTACACAAGTATTGAAAAAAAATTGCGTCTGTAGTCTTAAATAACGGCCAAGCAGACCTTTCCTCAGCTGTGGCCACACGGAATGATTAAATTTGAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84552 lncRNA downstream 43752 7266989 ~ 7268275 (-) True G74137
TU84727 lncRNA downstream 48002 7263770 ~ 7264025 (-) True G74296
TU84725 lncRNA downstream 51940 7259787 ~ 7260087 (-) True G74294
TU84720 lncRNA downstream 61332 7250463 ~ 7250695 (-) True G74289
TU84719 lncRNA downstream 61758 7250052 ~ 7250269 (-) True G74288
TU84545 lncRNA upstream 17903 7334138 ~ 7338185 (-) True G74130
TU84528 lncRNA upstream 29246 7345481 ~ 7345784 (-) True G74113
TU84819 lncRNA upstream 247487 7563722 ~ 7563999 (-) True G74363
TU84837 lncRNA upstream 281678 7597913 ~ 7598119 (-) True G74376
TU84839 lncRNA upstream 284906 7601141 ~ 7601382 (-) True G74378
CI01000012_07268516_07270856.mRNA mRNA downstream 41171 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07210006_07251043.mRNA mRNA downstream 60984 7209595 ~ 7251043 (-) True CI01000012_07210006_07251043
CI01000012_07164949_07166936.mRNA mRNA downstream 145091 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
CI01000012_07113504_07118919.mRNA mRNA downstream 192859 7113356 ~ 7119168 (-) True CI01000012_07113504_07118919
CI01000012_07092852_07097731.mRNA mRNA downstream 214296 7092852 ~ 7097731 (-) True CI01000012_07092852_07097731
CI01000012_07322669_07329009.mRNA mRNA upstream 6398 7322633 ~ 7329512 (-) True CI01000012_07322669_07329009
CI01000012_07356934_07358497.mRNA mRNA upstream 40628 7356863 ~ 7358612 (-) False CI01000012_07356934_07358497
CI01000012_07366635_07367888.mRNA mRNA upstream 50245 7366480 ~ 7367888 (-) True CI01000012_07366635_07367888
CI01000012_07368295_07372257.mRNA mRNA upstream 52060 7368295 ~ 7372257 (-) True CI01000012_07368295_07372257
CI01000012_07374223_07375676.mRNA mRNA upstream 57812 7374047 ~ 7375676 (-) True CI01000012_07374223_07375676
TU82841 other downstream 1164533 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1846170 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1895247 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1895247 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 2009821 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 39017 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 948094 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1050784 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1050846 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1050846 8367081 ~ 8367643 (-) True G74701

Expression Profile