RNA id: CI01000012_07092852_07097731.mRNA


Basic Information

Item Value
RNA id CI01000012_07092852_07097731.mRNA
length 1398
RNA type mRNA
GC content 0.48
exon number 8
gene id CI01000012_07092852_07097731
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7092852 ~ 7097731 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTTTAGAGAGACCCTTGGCAACCTTGATCGGTCTAAACTACAGCTCCTAGCACTCTCTTCTGCTGGAGTTGGAGCTCTTTTGTGCTACTTGGCATGGAAGCAAAGCCCCAAAACAATACCAATTGGAGATGGCTGGTGGGGAGCTGGGGAGAAGCCTTTAACTGAAGACGAAGCCATTCACAGATTTGTAGTGAAGACCTCAGTGGAAGAGATAGAGGATCTGCACAGACGCATTGATCAAACACGCTTCACGGATCCACTGGAGGATTCCCGGTTTCATTATGGATTTAACTCATCTTATCTTAGACGGGTGGTCTCCTATTGGAGGCAGGAGTTTGACTGGGAGAAGCAGGTGAAGTTGATTAACCAGTATCCTCACTTCAAAACCAAAATTGAGGGTATAGATGTGCATTTCGTTCATGTGAGGCCTGTTCAGAAGACTGGACAGACAGTTCTCCCTCTCATGATGGTTCACGGCTGGCCTGGATCCTTTTATGAGTTTTACAGGATTCTGCCTTTGCTCACTAAGACAGATTCAGATGTGGTCTTTGAGGTCATCTGTCCCTCCATTCCAGGCTACGGCTACTCTGAAGCGCCACATAAAAAAGGTTTTAACACTATGGAGGCTGCCCGCATCTTCCATAAGCTGATGGAAAGACTGGGCTTCGCTGAGTTTTACGTGCAGGGAGGAGACTGGGGAGCGCTTATTACCAGCAACATGGCCCAGATGAAGCCAGAGTGTGTTCGTGGTCTACACTTAAACATGGTCATTGCCAGGACAGACAGCCTTGGACAGCTCCTCTCCTTAGTCATTGGTCGCTACCTGCCGTTCCTGGTGGGCTTCACAAAGGAAGATGTCAGACGACTCTATCCTTACATGGAGAAGAATATATATGATATAATGAGAGAAACTGGCTATTTACACATTCAAGCCACAAAACCGGACACAGCAGGATGTGGACTGAACGACTCTCCAGTTGGATTGGCTGCATATATCTTGGAGAAATTCTCCTCCTGGACAGACTTGGGAAACAAAGACTTGGAGGATGGAGGTTTGGAAAGAAAGTTCAGTCTTGACGATCTCCTCACAAATGTCATGATCTACTGGACCACATGCTCCATCATTCCCTCCATGCGCTTCTACAAAGAGAACCTGAAGAAAGACTTCAAGACAAGGGTGGACAGAGTGACAAGTGTGTATGTGCCCACTGGCCTGGCTGCCTTTCCCGATGAGCTACTTCACTGTCCTAGGGCCTGGGCCAGCTCACGGTTTACAGATGTGCGTTCTTTCACCTACATGAGCCGAGGGGGACACTTCGCTGCCTTGGAAGAACCCCAGCTTATGGCTAATGACATCATTCAGTTTGTGGAGAAAGTGGAGAGCAAAGGCCACAAA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84570 lncRNA downstream 4770 7088071 ~ 7088082 (-) True G74155
TU84532 lncRNA downstream 39222 7038496 ~ 7053630 (-) True G74117
TU84676 lncRNA downstream 72278 7014865 ~ 7020574 (-) True G74252
TU84664 lncRNA downstream 181528 6911024 ~ 6911324 (-) True CI01000012_06872835_06911259
TU84557 lncRNA downstream 234210 6769833 ~ 6858642 (-) True G74142
TU84679 lncRNA upstream 3694 7101425 ~ 7101860 (-) True G74255
TU84680 lncRNA upstream 4459 7102190 ~ 7102463 (-) True G74256
TU84493 lncRNA upstream 6322 7104053 ~ 7104444 (-) True G74079
TU84487 lncRNA upstream 7693 7105424 ~ 7105836 (-) True G74073
TU84536 lncRNA upstream 10304 7108035 ~ 7109938 (-) True G74121
CI01000012_07032479_07034631.mRNA mRNA downstream 57651 7032453 ~ 7035201 (-) False CI01000012_07032479_07034631
CI01000012_06989295_06990487.mRNA mRNA downstream 102009 6988932 ~ 6990843 (-) True CI01000012_06989295_06990487
CI01000012_06979304_06984075.mRNA mRNA downstream 107908 6979296 ~ 6984944 (-) True CI01000012_06979304_06984075
CI01000012_06872835_06911259.mRNA mRNA downstream 180884 6872715 ~ 6911968 (-) False CI01000012_06872835_06911259
CI01000012_06713565_06749032.mRNA mRNA downstream 343782 6713456 ~ 6749070 (-) True CI01000012_06713565_06749032
CI01000012_07113504_07118919.mRNA mRNA upstream 15625 7113356 ~ 7119168 (-) True CI01000012_07113504_07118919
CI01000012_07164949_07166936.mRNA mRNA upstream 67108 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
CI01000012_07210006_07251043.mRNA mRNA upstream 111864 7209595 ~ 7251043 (-) True CI01000012_07210006_07251043
CI01000012_07268516_07270856.mRNA mRNA upstream 170757 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07316139_07320354.mRNA mRNA upstream 218299 7316030 ~ 7321193 (-) False CI01000012_07316139_07320354
TU82841 other downstream 945358 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1626995 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1676072 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1676072 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1790646 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 257521 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1166598 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1269288 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1269350 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1269350 8367081 ~ 8367643 (-) True G74701

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012074 True 1568 mRNA 0.46 8 NC_007124.7 33689740 ~ 33695296 (+)