RNA id: TU84536


Basic Information

Item Value
RNA id TU84536
length 1904
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G74121
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7108035 ~ 7109938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCATTCTTTTTTATTTAAAATGAAAATTGCTCAAGCATTCTCCAATAACTCAACTTAACACAGATTTCCTCTAATAAGTAGTGTCATTACCCAGGTTTGGTGGGTTGACCTTCATTCATAAAACATTTTAGTTCTAGATCACAATGTCATCATCAAAATGTATAATATTACAACTGTGTATAAAATAGATCTTTTTATATGTGACTGAACCTTCACGTAATCAGTCGTGAGGGCGAAGGAAAGTTGAAGTTTTTGATTAAAGATTACATGGGCACTTGAATTTTCAAAAAATAATGATGTGAAAATAATGAACTAATTAATTTATAATAAACAATGCAGAAGTGCATTAAAAAATAGAATTGTTCATTTTGATTTCATGATGATGTTCAAACAGGAGTAGTGGTGAGTATTTACTCTAACAAATGAATTCGTACCAGGCAGCCCTATAAGAAGGGTCCTCTGTAAAACCAAGGCTTGTAAAAAGTTTGTAGGAAAGCTGATTGCATTCTTCAATGAAACAGTACACAGGATAACCCTGAGAATGAAGCTTCTTCGCCATTGTAGTGACCAGGGTTTTGGCATATCCCTTCCCACGATGCTCTGGTAGAGTGTACAACATTCCTATGGCACAGTAATCATACAACAGTACCCAGGACACAGGCTGGTTGTTCTCATCTGTTATGCAGCATGTGGGGAAATGGCTGATGAGATTCAGGATGTTCCTGTAACCTTTGTCATCCCCACCAAATTTCCAAGTCTTGTTAACTACATCGGCATGTGACTCATTCAGGACAGACACTCTGGTCTCAAGGTCACTGAGGAAGGAAGCGAAGATACAAAAGAAAATTTTAATCATTATCAAGCTTTTATTTAAATGCATCGTATTGCAACACAAATAGATATTTATGAGTTGACGACAGGATCTTTTAAAACATAAAATATAGGGACCATCTTACCTGGTAATGAGCTCAGGTAAATGACTGGAATCAGTTAATATCATAAGGTGCACTAAAGAGAACCCTTTCATAGTGACACCCCTAGAAGCAGCAATTTCCTTCAGCATTGGTGAATGACGTAGATCACATCCTAGAATTAATGTAATTAAAATAACCAGAAGTCACAATAATAATATATATAATATAAAATAATATAGGAGGGGAAGACATACCTCCTACTAAGAAGTATGTACTCCAGTCAATTGCATTTTCCATAGTCAGCATTCTTCTCAGGACTTCTTCATCTGTACTGTATAGAGTCACCTTCCTCATAAAGTCCTTTGCTCGATTATTCTAATGATTTCAGACGAACATTAGTGATGTTGACATAAAAGTGGTTTAGTTGTAAGTTTTGGAGAGTTCATATAAACAACGCAATCTCACATTTGGATCTGGTCGAACAATGATAGTGGTAAAAGCTGGCCACGTATCCACCAATACCTCCAAAGTGTGTGGTTTCCGTCTGTTTATAGCAAAAACAAATCCATACACCTAAAAACCATCAGGTATTTGATTAAATGCGATTCTAACAGCATTACAATTCACGTTTTGCTGTGACATACAATAAAGTAAACATAGTACTTACCTTTATGGATTTAGGCAGATGCGCATATAAAGTAGTCTCTGCAATTTTTAACTCATCTGAATTTAAAATTTTCATGTTTTATAGTAAAAGCAGTCCGTCAGTTCTGTAAAGTGAAACCGATTTTGCCAGAGGTGGCAAATATGTATTATCCAGACCAGAGCAACGTCAAACAGTCTTAAAAGACGGCAGCTTGGTGAAATGTGTAGGCTAATATTTAACCTAGGGTGACTAGACGTTGGTGACCGTTTTCTCGGGATAATCCCGGTTTTTGTTGTCCTGTCCCCAACTGGAGCCGTTTGACAGTATGTACAAAACACCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84487 lncRNA downstream 2199 7105424 ~ 7105836 (-) True G74073
TU84493 lncRNA downstream 3591 7104053 ~ 7104444 (-) True G74079
TU84680 lncRNA downstream 5572 7102190 ~ 7102463 (-) True G74256
TU84679 lncRNA downstream 6175 7101425 ~ 7101860 (-) True G74255
TU84570 lncRNA downstream 19953 7088071 ~ 7088082 (-) True G74155
TU84711 lncRNA upstream 86093 7196031 ~ 7196281 (-) True G74280
TU84712 lncRNA upstream 86788 7196726 ~ 7197018 (-) True G74281
TU84715 lncRNA upstream 91327 7201265 ~ 7201484 (-) True G74284
TU84718 lncRNA upstream 104899 7214837 ~ 7215997 (-) True G74287
TU84719 lncRNA upstream 140114 7250052 ~ 7250269 (-) True G74288
CI01000012_07092852_07097731.mRNA mRNA downstream 10304 7092852 ~ 7097731 (-) True CI01000012_07092852_07097731
CI01000012_07032479_07034631.mRNA mRNA downstream 72834 7032453 ~ 7035201 (-) False CI01000012_07032479_07034631
CI01000012_06989295_06990487.mRNA mRNA downstream 117192 6988932 ~ 6990843 (-) True CI01000012_06989295_06990487
CI01000012_06979304_06984075.mRNA mRNA downstream 123091 6979296 ~ 6984944 (-) True CI01000012_06979304_06984075
CI01000012_06872835_06911259.mRNA mRNA downstream 196067 6872715 ~ 6911968 (-) False CI01000012_06872835_06911259
CI01000012_07113504_07118919.mRNA mRNA upstream 3418 7113356 ~ 7119168 (-) True CI01000012_07113504_07118919
CI01000012_07164949_07166936.mRNA mRNA upstream 54901 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
CI01000012_07210006_07251043.mRNA mRNA upstream 99657 7209595 ~ 7251043 (-) True CI01000012_07210006_07251043
CI01000012_07268516_07270856.mRNA mRNA upstream 158550 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07316139_07320354.mRNA mRNA upstream 206092 7316030 ~ 7321193 (-) False CI01000012_07316139_07320354
TU82841 other downstream 960541 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1642178 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1691255 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1691255 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1805829 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 245314 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1154391 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1257081 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1257143 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1257143 8367081 ~ 8367643 (-) True G74701

Expression Profile