RNA id: TU84712


Basic Information

Item Value
RNA id TU84712
length 293
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G74281
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7196726 ~ 7197018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTAGACTTCATCACTGATCTACCTACCTCCAATAACTGTACCTGTATCCTGGTGGTCATCGACAGATTCTCCAGATCCTGCCGGCTGATACCCCTCAAGGGTCTACCCACAGCCATGGAAACTGCAGAACTCATGTTTAACCACATCTTCAGGTACTATGGAATTCCCGAGGACATAGTGTCGGACCGTGGACCACAATTTATCTCACGAGTGTGGAAAGCTTTCTTCGCCCTCCTAGGTGTGACCGTAAGCCTCTCATCTGGTTACCATCCACAGTCGAACGGGCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84711 lncRNA downstream 445 7196031 ~ 7196281 (-) True G74280
TU84536 lncRNA downstream 86788 7108035 ~ 7109938 (-) True G74121
TU84487 lncRNA downstream 90890 7105424 ~ 7105836 (-) True G74073
TU84493 lncRNA downstream 92282 7104053 ~ 7104444 (-) True G74079
TU84680 lncRNA downstream 94263 7102190 ~ 7102463 (-) True G74256
TU84715 lncRNA upstream 4247 7201265 ~ 7201484 (-) True G74284
TU84718 lncRNA upstream 17819 7214837 ~ 7215997 (-) True G74287
TU84719 lncRNA upstream 53034 7250052 ~ 7250269 (-) True G74288
TU84720 lncRNA upstream 53445 7250463 ~ 7250695 (-) True G74289
TU84725 lncRNA upstream 62769 7259787 ~ 7260087 (-) True G74294
CI01000012_07164949_07166936.mRNA mRNA downstream 29790 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
CI01000012_07113504_07118919.mRNA mRNA downstream 77558 7113356 ~ 7119168 (-) True CI01000012_07113504_07118919
CI01000012_07092852_07097731.mRNA mRNA downstream 98995 7092852 ~ 7097731 (-) True CI01000012_07092852_07097731
CI01000012_07032479_07034631.mRNA mRNA downstream 161525 7032453 ~ 7035201 (-) False CI01000012_07032479_07034631
CI01000012_06989295_06990487.mRNA mRNA downstream 205883 6988932 ~ 6990843 (-) True CI01000012_06989295_06990487
CI01000012_07210006_07251043.mRNA mRNA upstream 12577 7209595 ~ 7251043 (-) True CI01000012_07210006_07251043
CI01000012_07268516_07270856.mRNA mRNA upstream 71470 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07316139_07320354.mRNA mRNA upstream 119012 7316030 ~ 7321193 (-) False CI01000012_07316139_07320354
CI01000012_07322669_07329009.mRNA mRNA upstream 125615 7322633 ~ 7329512 (-) True CI01000012_07322669_07329009
CI01000012_07356934_07358497.mRNA mRNA upstream 159845 7356863 ~ 7358612 (-) False CI01000012_07356934_07358497
TU82841 other downstream 1049232 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1730869 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1779946 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1779946 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1894520 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 158234 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1067311 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1170001 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1170063 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1170063 8367081 ~ 8367643 (-) True G74701

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU225810 True 473 lncRNA 0.47 1 NC_056720.1 13306444 ~ 13306916 (-)