RNA id: TU84711


Basic Information

Item Value
RNA id TU84711
length 251
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G74280
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7196031 ~ 7196281 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACCACCTCAATACAGAATTCACCCCACCTTCCATGTCTCACTCCTTAAACCTCACCACCTCTCTGTTTCTGTTCCCACAGAGGCTGGCGAGGAGCCCCCCCTTCCTCTGATCCTGGATGACGGAGCTGCATACCAGGTCAGCGAGATCTTGGACTCCCGGCGCCGTGGTGGTCTACTTGAATATCTGGTGGACTGGGAAGGCTATGGTCCCGAGGAGCGCTCATGGGTCCCCAGAAACGACATCCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84536 lncRNA downstream 86093 7108035 ~ 7109938 (-) True G74121
TU84487 lncRNA downstream 90195 7105424 ~ 7105836 (-) True G74073
TU84493 lncRNA downstream 91587 7104053 ~ 7104444 (-) True G74079
TU84680 lncRNA downstream 93568 7102190 ~ 7102463 (-) True G74256
TU84679 lncRNA downstream 94171 7101425 ~ 7101860 (-) True G74255
TU84712 lncRNA upstream 445 7196726 ~ 7197018 (-) True G74281
TU84715 lncRNA upstream 4984 7201265 ~ 7201484 (-) True G74284
TU84718 lncRNA upstream 18556 7214837 ~ 7215997 (-) True G74287
TU84719 lncRNA upstream 53771 7250052 ~ 7250269 (-) True G74288
TU84720 lncRNA upstream 54182 7250463 ~ 7250695 (-) True G74289
CI01000012_07164949_07166936.mRNA mRNA downstream 29095 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
CI01000012_07113504_07118919.mRNA mRNA downstream 76863 7113356 ~ 7119168 (-) True CI01000012_07113504_07118919
CI01000012_07092852_07097731.mRNA mRNA downstream 98300 7092852 ~ 7097731 (-) True CI01000012_07092852_07097731
CI01000012_07032479_07034631.mRNA mRNA downstream 160830 7032453 ~ 7035201 (-) False CI01000012_07032479_07034631
CI01000012_06989295_06990487.mRNA mRNA downstream 205188 6988932 ~ 6990843 (-) True CI01000012_06989295_06990487
CI01000012_07210006_07251043.mRNA mRNA upstream 13314 7209595 ~ 7251043 (-) True CI01000012_07210006_07251043
CI01000012_07268516_07270856.mRNA mRNA upstream 72207 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07316139_07320354.mRNA mRNA upstream 119749 7316030 ~ 7321193 (-) False CI01000012_07316139_07320354
CI01000012_07322669_07329009.mRNA mRNA upstream 126352 7322633 ~ 7329512 (-) True CI01000012_07322669_07329009
CI01000012_07356934_07358497.mRNA mRNA upstream 160582 7356863 ~ 7358612 (-) False CI01000012_07356934_07358497
TU82841 other downstream 1048537 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1730174 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1779251 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1779251 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1893825 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 158971 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1068048 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1170738 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1170800 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1170800 8367081 ~ 8367643 (-) True G74701

Expression Profile