RNA id: TU93966



Basic Information


Item Value
RNA id TU93966
length 5507
RNA type TUCP
GC content 0.41
exon number 2
gene id G82581
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9329329 ~ 9334948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCCAGAGGTGATTCTTTCTTCTTCCCTGAGTCTACAGTTGTAGAGCTTGAGGGTGTGCTTGGGCATGACTTGTCATCTTTCTTCTTTTTGTCCTTCTTGTAGCCAGAGAATACAGCCTTCCACAGGGACTTGTGCTTGGGTGGTGTTTCCTCTGTGCCAGATAGTCTCTCATTTTTGGCTTTCTTTTCCTTTTTGTTCTTGCGTGGAGAAAACAGTGAGCTGCGTTTCTTGCTCTTGCCTCCTGTGGAGCTCTCTGAAGATGTGACAGAACTGTCCATGGTCTTATTGGCTGGTGTAGTTAAGAAACGGTCAGGGAGTGTGTCTGTCTGCTTTTTGGACTCCAAGGCCTTCACCGCAGAGTCCTTGGGAGAGTTTATTTGCTTTTTGTTTTTTCCTGTTGTCTCTGGAACATTCCAGGCTACTTTTGCCACAGCACCCTTGGCAGCCTCTGATTCTTTCATCTTACTAAGCTGCTTGGCCATGGCATCTTTCAGAGCTTGGCTTTTCACAGACTTTTCCCGTGCCCTCATTCGCTCTTCTGCGATTTCCTTGGCTTCAGGAGAAAATTGTTGGGGACTCTTTCCTGTCCGAGAAACCCCTCCAGTAATGTTGGGCTTGCCGTTTTCCATTGCCAGTGCCAGGTGGAAAGGAGGCTTGTCCCGGTTGACCTTGCTGGTTGGAGGGGTGTAAAATTTTTCCAGACCACTTGTGTCTGGAGTGCGATCATCGTACGTGTCTTCAACGTCGTCGGCAAATGGTATCTCGTCTACGCACTCCACAAAAGATTTCCTCACTTCTTCGTGCCGTGGTTTATTCTGTTCCTTTACCCTCATCACAACAGGTGGGTTAGTTCTAGGGGTCGGCACTGGAGCCATAACTGGTTTTGGTTGAGGGGGACTAACTGGAGTCTTAGGTTTAGGAGGCGTAGTCTCAGATTTGGGTTCCTCTGTGTCTTCAAGGAGGTTGTCCCAGGAAGCCTGAGGCCTTTTGTTTTGGAGAGCAGCTGGCTCTTCATTAGGTGGAGGTGGTGGGGGACTGGAAGGAGGTGTGAGCATGGTAGAATCAGAGTTGTTGTAGCTGTCACTAGTTGCTGTCTGACTGGTGGTCACGCTTCCATTAAGACCCAACCCTGAACTGCTGCTCAAGTCCTTCTTCTCAGAACCATTACTCTTTGGTTCCACCGGATATATAACCTGACCTTCTAAAGTAATGTTGATCCTGCGTATGATAGAACGGCCCGCGAAAGTAGGCTTCTGCTCTTCAGACAAGTCCTCTGGGGTATAAGACCTGGGAGATGATGATTCAGGCGTTGGAGTTTTCACAATGCTCTTATCCACTGTTGTTCTGCTTCGATCCAGAGGCGTGAGTCCTAAACTTTTTCTGATCTCTGCGCTCTTCAACCAGAACTCCTCAATGAGGTCTGTTTTCTTGACAGTGGTTTCCTCGGGTGCTGGATCATTCAAGGATTCATCGGTTCGGTTCTCAGAAGCAGGTTTAGCCAAAGGAGTGGAAGTGACTGCTGGGACTGGCTGAGTTCTTACAGGGGAGCTTGAGGAGAGGGGTGAGGGTGGCTCATGGCAGGGTTGTGATTGGGTACATATTGGAGATAAAGGATTACCTGTTGGAGAACAAGCACAAGGCTGGGGCTGGACAGGTGATTTGGGAGACACCGTCTCTGGCTGTGGAACAGGTTGGGAGCAGATGGGCGATAGTGCAACAATTTGAGCAACAGGAGAATGAGGTCTTTTAGCATCAGGACTCTGAGGTGGGGGAATGTCCAGTTTGGCATTATCAGGTAGAAAGGGATCAGGGAAGAAACGTGCACCAGGAGATTTGACTAGTATTACAGGAGAAACTTCTTTCACCTGTCTCCTCAATGGGTAAAGCAGGTTTTTGGATTGGAGACAGCACAACGTCCACAATCAATTCCCTTGGATTTGCAGATGTTTTCTCTGCAAGGAAAAATAAAATTGGCTCAAATATTGATGGACATTGAAAATCCCCTTGTGTTGAGATTTTAATCATCAAAGTCTGAATAATTATGAACCAAGACATTGATGCAATGTATTCAGAGACGTAAGTTATGCAAGGACATGAACATTTGCAATCATTGGTCTCAAACAAAAATGGAAAAGGCATGAAATTACATGATTATGATTAGGTTATAATTACCAGTGTTGAAAACATGTCCCTGGCTCTCTGGTTTGCCATTATCCAGGGGAAGCATCACCACTTCATCTATGCAATGTGAACGGGCTTCAGCCTCTGCATCTGAGGGAATGTCCTCTGTAACATTAGAAATTAAAAGTGTGAAAGTCTGTTCAAAATATATGGAAAGCAAGCAAATTCTGTATAAATGTCTATTGACAATGTATTATTTCAAACACTTTAAGTTGTCAACCCTGTTACCATCATATTTTCCCCCTTTTTAAATAATTTAAAATAAAATATAAAAAAGGTAAGCGACAAAGTAAAGTCAAAGTAACTTCATCTCATGTTTGTCAGTAGGAGACAACCTTAAAATGTCAAGCTAATTAAGCTAAATTTATTTACTAAAATAGTGAAAGGTGTTTTCAGTTAATTAAATTCTAAGTAGTACTTTGCAATTTCACTACCTCGAGGCACAAGGCCTGGTATTGCCAATTAAGCTCTAAAACTGGTAACATTTTAACCTTTCTAAAGGCGTAAAGAAATCATAACATACGATGGCACATGGATTTGACAAACCTTGATCTATTTCAGTGCCCGGCTCAAAGTCAGGACTGCCCGCTTCTGCGTCATCATCCTCTTCACAGGGCTCTGGGATCACAGGAGAACAATAAGATGATGAATAAGTTGGGCAAAAGTCTAAAAGATTAGTGAAAGACTAAAAAATAGTATAAACTATTAAACTATACTTATGAATATTAGAAGACCTTCCATATACAGAAGGTGTTAGCAGTACAAAACAGTTTTCTGGCTAAATTATGAAATATGTGTGCAAAGAAAGAAAATATCAATCATGTAGCTAGCTAACAAATGATGGTCTTTAGGGAACTTTAACTTAAACATACAATAAGTGCACATGACAAAATGTAGAAATAAACAAATGGTATTAGTAGTTAAACACATGCAAGTATGCAAGTTTTCACACAGTCAAATGGATTGGGCTCAAAACCCACAGCTGTTGAGAAGGGTTGGGATCTGGGTGAGTAAAGAGGTGTGAATAAAAAGCAATGACACCAAACTGAACATTACAAACATAAACAAATATGAAGACTTAGCTGAGACACCCTCTACCACAAACCACCATTTTTGTCAGCAAATTATAATCGTTAATGTTAATATTTAGACAAAAGTTCTGCTCATTACAAGCAAAACTTTGCACCATAGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGCTCCAGAATCGTATGCAACCCTTTTCAGTCTATTTCTGTTCTGCATGACTGTTATATGCACAAGGTTGTCATATTTGAGTTTTTTGCGTGTCCGCTCTCTGAACCATGAAAATACCTAGAAATGTTTTTAATTCTTTTTGGCTTTGACCTCTCCGTGGCATTGTGCTGTGGAGACAAAGTGCTTTACAATTATGTTACAACAAGCTCCTTGTGTCCTCCACAGATGCACCACATACATCCTGGGACAATAAATTTAGAGTGTATGAATTCTTTTAACAATCTGTACTTACATAATTTCAGAAGAATGCTTAAGGAAACATGTCAGATGCATGCATTAGTCAGTACATCTTTGCTTTGCGTCAAGCTGAATGATAAAATCACACCAGTCTCACGACTCCAGCATGCAGTAGTGTCGACTTGTAATTGCATGTTACCTTTTAACATGCAATCAGTGTTCAACAATGATTGCAATGGTGTTAAGTGTTTAATAGTCCTGCCATGCACTGATGTGTGTTTGTGTTAGCACTAATATAAGTTTCTGGACTTGTTTTTCTTTTCTACCTTTAGACATCGAGTCCAACCAGGCTCTGACAGCCTCATGACGCATGGATTTGTGGGAGGGGGCTACAATTAAACCAATGGGAATGGGAACAGGTACATGAAATGCATAGTCACACAACAACATACAAAAATAAATTCATTCATGAATAAATCAAAGAGATTAACAGAAAAAAGGGACATGTACTTAGTTAGCAATGCCCTAATATCCACAATGATGATAAAATGAGACACAAGGACATAAAAAAATATAGGAGAACAAATAAGTCAACCCGAGAAAGGTCAACGTAATGTCAACAATAACAGTGAGTGATATACAAAAAGTATCAAAGCAAGATAATAGAATGCAGAAAGTATAAGAAGCAAGCAAAACACTGTTGTGGATGAAAGGAAGAGGACAGAAGTTGTCCAACTGACCAGAGAAATTCACATTCACAAAAGCGATCACACATGCAAATCACACACACACATCCCACAACACCTGGTAATATTCATCTAGAGTTCACCACTATTAAAATTCTGTCTGATGTCCAATTTTAAAATAATACTAATAATAATAAATGCTACAAGTGAATTTGGGCATCACAGCATTATAATGTGCAATAAGAAAATGGATATTCATTCTGAGATTATCTAAAGATTACATTTAATCAGTAAAGATTAAAGATGAACTTTAAGTAAGTTAGATGATGGCACAGGGAATTGAACATGCACCAAAAAAAAAAAAAAAAATTTACAAAATCCAATTGCAAGGAAAAACATTTGAGATGCATGTTAATACCAGGTGTAAATAGGACCATCTACCACCCCCAAAAAGCCACAGGGCCCAGGTATGACTCCTCCACATGGGGTTACCTGTGGAAGAGGTGGGCTGTGTGAGCTGGGTGTTCAGCGAGGGCTGGGAGCCTAAGGGTGAGAGCGAGGGGCCCTCCACCACCCCTTCAGCCTGTTTGGATGTCCAGTGTTTGTCCATCTGGATGTCCAGAGGGTCTACTGGATGAATAGCTTGCTGGATGTGCAGGTTTCTAGCTGCATGGTGGCATTACGGGTAGCCATTTAGGTGACAAGATCATTTTGTAGGATTAATTGGTGAGTCCATTAGCCCGTCAGGAACAGAAAATCCAATTTGTTTGAAAAGTAAAAAGGTCCAGGTCACAAAAAGTCCCCATAGGCAGCAATGTGAGCAGAGAGTGAGATTCAGCAGCAATTAATGTCCAGAAAGAAACAGTAAAGACAAAAAAAGAGAGGAGAACATTATAGTTTAGAATAGACTGTAAAGTGCAAAGTTAGTACATACTTTAGAAATGTAGCATGCAAAGTCTCCTCCACAAATGACAGCAATTTTTTAAAAAAAAGCACCAACTGCATGGGTGCTTTCACACTTGAGCTTTCGATGTGAATTTGAGTACACTTGATGTTAATGTTCAGTTCATTTATTTAGCATGAAGTCGTGTCCAAATCAGCTTGAAACTGCAGTCTGGTTTATGGTTCATGTATGCATGGCCAAATTAGCACAAGTCAACTGCTAATGATGACATAATTTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94024 lncRNA upstream 89744 9239381 ~ 9239585 (+) True G82639
TU94023 lncRNA upstream 92121 9236988 ~ 9237208 (+) True G82638
TU93972 lncRNA upstream 134061 9041611 ~ 9130939 (+) True G82587
TU94005 lncRNA upstream 190884 9136983 ~ 9138445 (+) True G82620
TU93997 lncRNA upstream 254753 9065133 ~ 9074576 (+) True G82612
TU93963 lncRNA downstream 31899 9366847 ~ 9386234 (+) False G82580
TU93964 lncRNA downstream 31899 9366847 ~ 9388557 (+) True G82580
TU94044 lncRNA downstream 35560 9370508 ~ 9372174 (+) True G82659
TU94051 lncRNA downstream 46107 9381055 ~ 9384143 (+) True G82666
TU94062 lncRNA downstream 61984 9396932 ~ 9397195 (+) True G82676
CI01000013_09279917_09290301.mRNA mRNA upstream 38569 9279917 ~ 9290760 (+) True CI01000013_09279917_09290301
CI01000013_09243644_09260619.mRNA mRNA upstream 68710 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
CI01000013_09178561_09180465.mRNA mRNA upstream 148172 9177107 ~ 9181157 (+) False CI01000013_09178561_09180465
CI01000013_09075883_09113011.mRNA mRNA upstream 216046 9075825 ~ 9113283 (+) True CI01000013_09075883_09113011
CI01000013_08943859_08944315.mRNA mRNA upstream 384704 8942838 ~ 8944625 (+) True CI01000013_08943859_08944315
CI01000013_09430170_09443518.mRNA mRNA downstream 95222 9430170 ~ 9444023 (+) True CI01000013_09430170_09443518
CI01000013_09681047_09683275.mRNA mRNA downstream 346099 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_10261599_10283287.mRNA mRNA downstream 925323 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
CI01000013_10335904_10336688.mRNA mRNA downstream 1000956 10335904 ~ 10336896 (+) True CI01000013_10335904_10336688
CI01000013_10502138_10525511.mRNA mRNA downstream 1165742 10500690 ~ 10525674 (+) True CI01000013_10502138_10525511
TU93521 other upstream 1287986 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 1991090 7335945 ~ 7338239 (+) True G81994
TU92936 other upstream 3246962 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 3269833 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 4493097 4835078 ~ 4836232 (+) True G80845
TU95556 other downstream 266663 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 266663 9601611 ~ 9602184 (+) False G84005
TU95773 other downstream 695660 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 741506 10076454 ~ 10079336 (+) True G84215
TU95833 other downstream 880179 10215127 ~ 10215962 (+) True G84250

Expression Profile