RNA id: TU95556



Basic Information


Item Value
RNA id TU95556
length 625
RNA type TUCP
GC content 0.54
exon number 1
gene id G84005
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9601611 ~ 9602235 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTACTTCGAGTGTAACTACAACGAGCCAATGCACATTGGCATGCAATCATATGCATCAGCTGCTCGCCTCGCAGCGCGTGTATATAACGAGCAGCAGGTGCGTTGCATCTTCAGCTTTTCGCTTCGGAGCCGAACCTCAGGGTTACTACGGAGTGCATCAAACTGGAAAGACGAGCCGTTGCGGGACTTCTCTGTTGTGCAGGCGGACAGCACTGCAGCGGGCCGGTCTCCTTCCTTTGTGTTGCCGAGGAGCAAATTCAGAGCCGTTCTCACGGCTGGTAGAGCGGTGCGCTTGGAGCGCTAAAAAGCTGTTCTGACAGCTGGTGAGACGGTTGTGAGGAGGGAGTGCACACGACAGGCTGCACTACTTCCCTGTCTGTGTTGCTGCGGCTTTTTCCCCTGCGTGCTTCGGCACGTAAAGAGCGAGTCCCTAAAAGAGCTTACACAAGTAGATTCGCGTCTTTTTAAAGATGTCGTTCTACTTGTGTGTTTCTGGATGCGGTCGTTATCTATCACCGCGGGATGGTCACCAACGCTGTATCGCGTGCCTGGGCTTAAGTCACGCTGAAGCGGCGTTTGTGGATGAGTCATGCACCCATTGTGGGAAGATGACCATCTCGGAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95506 lncRNA upstream 38258 9563054 ~ 9563353 (+) True G83958
TU94080 lncRNA upstream 122617 9438212 ~ 9478994 (+) True G82694
TU94062 lncRNA upstream 204416 9396932 ~ 9397195 (+) True G82676
TU93964 lncRNA upstream 213054 9366847 ~ 9388557 (+) True G82580
TU93963 lncRNA upstream 215377 9366847 ~ 9386234 (+) False G82580
TU95593 lncRNA downstream 57072 9659307 ~ 9659737 (+) True G84023
TU95616 lncRNA downstream 149376 9751611 ~ 9751958 (+) True G84046
TU95705 lncRNA downstream 203551 9805786 ~ 9805985 (+) True G84134
TU95712 lncRNA downstream 210893 9813128 ~ 9813566 (+) True G84141
TU95691 lncRNA downstream 219545 9821780 ~ 9822014 (+) True G84120
CI01000013_09430170_09443518.mRNA mRNA upstream 157588 9430170 ~ 9444023 (+) True CI01000013_09430170_09443518
CI01000013_09279917_09290301.mRNA mRNA upstream 310851 9279917 ~ 9290760 (+) True CI01000013_09279917_09290301
CI01000013_09243644_09260619.mRNA mRNA upstream 340992 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
CI01000013_09178561_09180465.mRNA mRNA upstream 420454 9177107 ~ 9181157 (+) False CI01000013_09178561_09180465
CI01000013_09075883_09113011.mRNA mRNA upstream 488328 9075825 ~ 9113283 (+) True CI01000013_09075883_09113011
CI01000013_09681047_09683275.mRNA mRNA downstream 78812 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_10261599_10283287.mRNA mRNA downstream 658036 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
CI01000013_10335904_10336688.mRNA mRNA downstream 733669 10335904 ~ 10336896 (+) True CI01000013_10335904_10336688
CI01000013_10502138_10525511.mRNA mRNA downstream 898455 10500690 ~ 10525674 (+) True CI01000013_10502138_10525511
CI01000013_10586449_10594082.mRNA mRNA downstream 983583 10585818 ~ 10594442 (+) True CI01000013_10586449_10594082
TU93966 other upstream 266663 9329329 ~ 9334948 (+) True G82581
TU93521 other upstream 1560268 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 2263372 7335945 ~ 7338239 (+) True G81994
TU92936 other upstream 3519244 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 3542115 6056662 ~ 6056782 (+) True G81681
TU95773 other downstream 428373 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 474219 10076454 ~ 10079336 (+) True G84215
TU95833 other downstream 612892 10215127 ~ 10215962 (+) True G84250
TU96004 other downstream 1170051 10772286 ~ 10784757 (+) False CI01000013_10756927_10790192
TU96453 other downstream 2567754 12169989 ~ 12170818 (+) True G84768

Expression Profile