RNA id: CI01000016_07056612_07073504.mRNA



Basic Information


Item Value
RNA id CI01000016_07056612_07073504.mRNA
length 2013
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000016_07056612_07073504
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7056382 ~ 7074008 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTTGTGGAGCGGATGGCGTGCAGGACTCAACAGTGCAAGCATTTCACTCTCATTTGCGACTAAAAATAGATGCGTGAGAAGTACCCACCAACTGCGTCAGAAAGGTATAAAGGGAAATATATGCCTTATTAGGGTCTGTTTCTATGGGCTGCTATACTTAAGCTGTCCACCATATGACACTTGAAAGCAAGTTGACTGCATCTGCAACCTAGTTATTCACATGTATGAATATCTATATCTGCAATAGACATCAGCAGATGATTTTCACAGTATTTAGTTTATCATTAATGTGATAATTCTATAGACAGATAATGCATATACAGCCATCAGCTGCTCAATACTGTGACATTTTCAAAGAAAATGTTAGTGTGAGTGATGAACAGTGTCATCACCATTCCAAGATAGCAGACACATCAACGTGTCTGGAGCGGTTGAATGTGGAATTTACATATGCATCTCTATGGTATAATGCCATGGATGAGGCAATTGGACAACAGGCTTCCACAACACCACCGCTAGCAGTGGCATCATCACTGGAAATCAAAGCTGCAAGCTCCAGTTTCTGCCACATGTCGTGTTTGTCTGGTGGGCTCCATCAGCTCATCCACATTTCCGGCTCCAAGCCAGATATTTGCATCATTCTGCAACTACCACTTTTGGGAAAACGAATTGCTCCAGAGCACATGGGGGCGGAGCATCTTCAACGAGCCCTCATGCAGAAAGCGCCGCGGTCAACCAACGGAATCTCCTCGTCTGCGTGTGCTAAAGAAGGAAACTGTTCAAGTGTTAAGGATTTGCAGTCTATGAAGTCAGTTTCTGGGACTCTAAATGAGGGAATTGTCTCTGTCTGTAACATCTGCAAGTCCCTCATGGACGCACATGTAGATCCCACCACTGACATGTGCTCCAATTACAGACAAATCAGGGAACATATTGAGCACGCTGAACAGTGCATGAAAAAGACAGAGACAGTGATTAAAGAAAAGCTGCGATATTTGGATGAACGGATGGAGCAACTTATTAGAGAGAAGTGCAATATTGAGCATCAGAAGAAAGAAAAGCGCATGGCCATGGATAAATTACACACAGAGAAGAATTCTGCTGAGGAATTATTAAAGTATTCCAAAGCAGCTTTGGAACAGGCTGGAAAAAACCTAGAATCAGCAAAATATGCCCTAAGAAGAGCACAAGAGAGGAGGAACACAGGTGAAGGTGTTGCAATTGCAGGGGGGGTACTGCTTGCAATACCAGTTATTGGATGGATTGCAGGTTCCATAATGCTAAGTCAGGGACTGCAGGAATTAAATGAGGCTTCAAATGCCATTACAGCTGCTAAATGGGAGAAACAAAACTCTGACATTCAAGTGATGAACTGCACCACACAAGTGTCTTATTACCAGGAAACAATCTCCAGGACACAGAATGAAATTGAGCAGACCAATGAGGCACTGAAGAATATTGAGTGGGAGATAAAAGGGGTTCAAACACATCTAAAGGGCACAGGTGAAATTCAGGAAATGGTCAGGAAAGCAATGAACTTTCTGGGTGTTCTTGGTGGAAGAGTCACTGTACTGGAGAGGCAAACTCAATGTTTCATCCTCTGGGAACCTGTGGTAAAGACCATGGAAGATGTGATGAAGGCAGTAGTAAATATTGCAGAGAATCGGCTCCTCTATAGTCAAGGTGTACCAGGCCTCATAAATGCTTTGAGGGAGAATGTTGGAGGACTACGGGCTTTATGCAACTCAGCCAGTAATTCTGAAAATACCAGCTATTACTGATCACCTCCATGTAAGGCACAGAGCAAAGGCTTATAAAAGAAAAAGAAGTTTATCTGTGTTTTAGAAATCACTACAAGTAACTCTGGAAACTGTTTAACATTATCTCTACAATAATGTATGTCAGTGCCTTTGGTAGCTGTTTAGCTAAAAAAAAAAAAAACGGAGAAAGTATAACATTTGACATGTATTACGACTATACTTACAAATTATGTTGTAAACACACAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111031 lncRNA downstream 3546 7052190 ~ 7052836 (-) True G97559
TU111030 lncRNA downstream 10073 7046089 ~ 7046309 (-) True G97558
TU111029 lncRNA downstream 10486 7045657 ~ 7045896 (-) True G97557
TU111028 lncRNA downstream 11522 7044621 ~ 7044860 (-) True CI01000016_06998707_07047702
TU111017 lncRNA downstream 111736 6944345 ~ 6944646 (-) True G97545
TU111062 lncRNA upstream 40849 7114828 ~ 7115045 (-) True G97589
TU111063 lncRNA upstream 41613 7115592 ~ 7115826 (-) True G97590
TU111067 lncRNA upstream 48945 7122924 ~ 7123316 (-) True G97594
TU111074 lncRNA upstream 85994 7159973 ~ 7160626 (-) True G97601
TU111076 lncRNA upstream 87370 7161349 ~ 7161572 (-) True G97603
CI01000016_06998707_07047702.mRNA mRNA downstream 8680 6998534 ~ 7047702 (-) False CI01000016_06998707_07047702
CI01000016_06975396_06992012.mRNA mRNA downstream 64370 6975017 ~ 6992012 (-) True CI01000016_06975396_06992012
CI01000016_06963083_06974158.mRNA mRNA downstream 82194 6963083 ~ 6974188 (-) True CI01000016_06963083_06974158
CI01000016_06905366_06911635.mRNA mRNA downstream 144747 6905315 ~ 6911635 (-) True CI01000016_06905366_06911635
CI01000016_06814184_06871990.mRNA mRNA downstream 184392 6814024 ~ 6871990 (-) True CI01000016_06814184_06871990
CI01000016_07088885_07090963.mRNA mRNA upstream 14709 7088688 ~ 7091043 (-) True CI01000016_07088885_07090963
CI01000016_07118966_07120089.mRNA mRNA upstream 44876 7118855 ~ 7120089 (-) True CI01000016_07118966_07120089
CI01000016_07127481_07148708.mRNA mRNA upstream 53486 7127465 ~ 7148895 (-) True CI01000016_07127481_07148708
CI01000016_07191021_07191531.mRNA mRNA upstream 117029 7191008 ~ 7191791 (-) True CI01000016_07191021_07191531
CI01000016_07204062_07211287.mRNA mRNA upstream 130013 7203992 ~ 7212446 (-) True CI01000016_07204062_07211287
TU110786 other downstream 896661 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 1638165 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 1725536 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 2132978 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 3125331 3865761 ~ 3890326 (-) True G96690
TU112287 other upstream 1814854 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 1862810 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 2161017 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 2182123 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 2435643 9511357 ~ 9511415 (-) False G98896

Expression Profile