RNA id: CI01000016_07127481_07148708.mRNA



Basic Information


Item Value
RNA id CI01000016_07127481_07148708.mRNA
length 1667
RNA type mRNA
GC content 0.47
exon number 7
gene id CI01000016_07127481_07148708
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7127465 ~ 7148895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGGTGAGCGCACATGAAAGCAGTGGCGATAAAATGCATTGCCCATTGTTCCCTTTCAAAAGCTACTCTCAATGCTGCGCTGATTTAAGCGCTATGGAAAAACATCTTTGTTTGACCGGTTGTGAACACGTGTGGCAAACACACCAAGAATTTGGCTTAAATAACCTCTGATGATGACGTCATCGGAATGCGCACATCAGAGGCTATGAACAGATGTGTGACAGAGAGCTCGTCCTCGAGCCCGCTTCTGGAGCGAGCCTTTAGCACTTATTCAGACCGGGCTGAAGACACAAGTTCTCTTAGGGAAATGGATTTTGAGTGCGCTGCCTCTGAGCGCTCCTCTCGTGATGACAGATCGTACGATGAGCTACTCAGGCATGGAAATGGTTTGGTTATTAAAAGTCTGACACGGACCAAAAACCTGCACTTTGCAAATTGTGTCGGACGCCAGTTCCCACAACGGGTTGAAACACTACTAACCTCTCTATCACCTACACAAGAACCACGTGAAAGAGTATGGAGAAAGTTTACGAATCAGAGGCACAAAGAACCGTCAGGTGCTCAAAATAAACCACAGAGTACAACGTTAGAGCAGACTTTTGCCTGCGGCACTCCATATAACGGAGACTCGCGAAGATGGAAGGAGATAACAGCGGCCATTGCAACTTATCTCTGCAAAGACATGGTCCCAATTTACACAGTCGAGAAACGGGTTTCGTGCATTGTGTCGGGCCAAAGTAGAGGAGGAAATCCACCAGGTAGCATACTACGCTATAATAACGGATATGTGGATGAGCCAAACAACACATACCTATATAAGCTTGACGAGCGGAATGTGAAACTACCCCAGGTGGAACGAGCGGTTGGTGTCTGCAAGGGATTGATGATTGAGGGGGTTATAGAGCAGGAGAAAGTGCTCTCACAGGTCCTCTGTGCAGACAAAAAAACAAGACATCTAGTCCTAACCTGGCAGGACATGGATGTTCTCGAGTCCATGAATAAGGCACTGAGTCCTCTCATGGAATTTACAGATGCCTTGTCTGGAGAGCAGTGTACCAGTGTGTCCTGCGTGAAACCAGTCCTTCATCTTTTTAACACTCAAATGCTTAAGTCTCAGGATGACAACAAGCAGCCGACCATTACCATCAAACAGGGCATCCTGAAATATTTAAATGACAAATATGATGACCAAACCATAGAGGAGCTGCTTGACATGGCCTCCCTTGTTGACCCTCGTTTTAAAACAACATATATTACAGAGGAGAAGGTTGAGTACATAAAGACCAGAGCTATGTCAGAACTGGAGAACCTGGTGGCTGAACAGACAGTGTCAGCAGAGGCAGCCCCCCTTCCATCAGCTGCTACAGATGAACCAGAGACAGAGGATCCAAGTGCAAGAATAACAATATTTATTGACAGGAAAATGCTGTACAATAACTTCACTCCAAGGGTCAGTCGAGGCAGAGGCTGTGGCGTGCAGAGTGGCGAGGCACTGGGTGGCGCAGGGCTACAGCGGGTATCAGAGAACAAGGATAATCCAACCCAGAAAACAGGGCACACGACGAAAGTCAAGAATCCAAAAACCAGGAAGAAACACACAGAGAACACGACACCAGGAACAGCCTGCAACGAACTGACAAAGACCACATAAAGACATGCACAATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111067 lncRNA downstream 4149 7122924 ~ 7123316 (-) True G97594
TU111063 lncRNA downstream 11639 7115592 ~ 7115826 (-) True G97590
TU111062 lncRNA downstream 12420 7114828 ~ 7115045 (-) True G97589
TU111042 lncRNA downstream 53457 7073773 ~ 7074008 (-) True CI01000016_07056612_07073504
TU111041 lncRNA downstream 53823 7073435 ~ 7073642 (-) False CI01000016_07056612_07073504
TU111074 lncRNA upstream 11078 7159973 ~ 7160626 (-) True G97601
TU111076 lncRNA upstream 12454 7161349 ~ 7161572 (-) True G97603
TU111113 lncRNA upstream 312296 7461191 ~ 7461463 (-) True G97640
TU111122 lncRNA upstream 332316 7481211 ~ 7534573 (-) True G97646
TU111132 lncRNA upstream 402057 7550952 ~ 7552253 (-) True G97656
CI01000016_07118966_07120089.mRNA mRNA downstream 7376 7118855 ~ 7120089 (-) True CI01000016_07118966_07120089
CI01000016_07088885_07090963.mRNA mRNA downstream 36422 7088688 ~ 7091043 (-) True CI01000016_07088885_07090963
CI01000016_07056612_07073504.mRNA mRNA downstream 53486 7056382 ~ 7073979 (-) False CI01000016_07056612_07073504
CI01000016_06998707_07047702.mRNA mRNA downstream 79763 6998534 ~ 7047702 (-) False CI01000016_06998707_07047702
CI01000016_06975396_06992012.mRNA mRNA downstream 135453 6975017 ~ 6992012 (-) True CI01000016_06975396_06992012
CI01000016_07191021_07191531.mRNA mRNA upstream 42113 7191008 ~ 7191791 (-) True CI01000016_07191021_07191531
CI01000016_07204062_07211287.mRNA mRNA upstream 55097 7203992 ~ 7212446 (-) True CI01000016_07204062_07211287
CI01000016_07242123_07296094.mRNA mRNA upstream 91878 7240773 ~ 7296702 (-) True CI01000016_07242123_07296094
CI01000016_07318179_07319855.mRNA mRNA upstream 169233 7318128 ~ 7319855 (-) True CI01000016_07318179_07319855
CI01000016_07421716_07426983.mRNA mRNA upstream 272695 7421590 ~ 7442256 (-) True CI01000016_07421716_07426983
TU110786 other downstream 967744 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 1709248 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 1796619 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 2204061 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 3196414 3865761 ~ 3890326 (-) True G96690
TU112287 other upstream 1739938 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 1787894 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 2086101 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 2107207 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 2360727 9511357 ~ 9511415 (-) False G98896

Expression Profile