RNA id: TU111042


Basic Information

Item Value
RNA id TU111042
length 236
lncRNA type sense_over
GC content 0.44
exon number 1
gene id CI01000016_07056612_07073504
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7056382 ~ 7074008 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGCTGTAGTGTAATCTGATGTAGTGGCATTTTGTGGAGCGGATGGCGTGCAGGACTCAACAGTGCAAGCATTTCACTCTCATTTGCGACTAAAAATAGATGCGTGAGAAGTACCCACCAACTGCGTCAGAAAGGTATAAAGGGAAATATATGCCTTATTAGGGTCTGTTTCTATGGGCTGCTATACTTAAGCTGTCCACCATATGACACTTGAAAGCAAGTTGACTGCATCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111041 lncRNA downstream 131 7073435 ~ 7073642 (-) False CI01000016_07056612_07073504
TU110903 lncRNA downstream 1551 7068773 ~ 7072222 (-) True G97435
TU111038 lncRNA downstream 9184 7064344 ~ 7064589 (-) True G97566
TU111036 lncRNA downstream 10448 7063107 ~ 7063325 (-) True G97564
TU111034 lncRNA downstream 11856 7061579 ~ 7061917 (-) True G97562
TU111062 lncRNA upstream 40820 7114828 ~ 7115045 (-) True G97589
TU111063 lncRNA upstream 41584 7115592 ~ 7115826 (-) True G97590
TU111067 lncRNA upstream 48916 7122924 ~ 7123316 (-) True G97594
TU111074 lncRNA upstream 85965 7159973 ~ 7160626 (-) True G97601
TU111076 lncRNA upstream 87341 7161349 ~ 7161572 (-) True G97603
CI01000016_06998707_07047702.mRNA mRNA downstream 26071 6998534 ~ 7047702 (-) False CI01000016_06998707_07047702
CI01000016_06975396_06992012.mRNA mRNA downstream 81761 6975017 ~ 6992012 (-) True CI01000016_06975396_06992012
CI01000016_06963083_06974158.mRNA mRNA downstream 99585 6963083 ~ 6974188 (-) True CI01000016_06963083_06974158
CI01000016_06905366_06911635.mRNA mRNA downstream 162138 6905315 ~ 6911635 (-) True CI01000016_06905366_06911635
CI01000016_06814184_06871990.mRNA mRNA downstream 201783 6814024 ~ 6871990 (-) True CI01000016_06814184_06871990
CI01000016_07088885_07090963.mRNA mRNA upstream 14680 7088688 ~ 7091043 (-) True CI01000016_07088885_07090963
CI01000016_07118966_07120089.mRNA mRNA upstream 44847 7118855 ~ 7120089 (-) True CI01000016_07118966_07120089
CI01000016_07127481_07148708.mRNA mRNA upstream 53457 7127465 ~ 7148895 (-) True CI01000016_07127481_07148708
CI01000016_07191021_07191531.mRNA mRNA upstream 117000 7191008 ~ 7191791 (-) True CI01000016_07191021_07191531
CI01000016_07204062_07211287.mRNA mRNA upstream 129984 7203992 ~ 7212446 (-) True CI01000016_07204062_07211287
TU110786 other downstream 914052 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 1655556 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 1742927 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 2150369 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 3142722 3865761 ~ 3890326 (-) True G96690
TU112287 other upstream 1814825 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 1862781 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 2160988 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 2182094 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 2435614 9511357 ~ 9511415 (-) False G98896

Expression Profile