RNA id: CI01000018_06757523_06763462.mRNA


Basic Information

Item Value
RNA id CI01000018_06757523_06763462.mRNA
length 3790
RNA type mRNA
GC content 0.43
exon number 11
gene id CI01000018_06757523_06763462
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6756756 ~ 6764763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCATCTCAGATACTAAATCATTTCATAAAACCTTTAGGTGCCTGAGGGGCAGATAAGATCACTCCCACCTAGAAAGGCTTAGTTCCCGGATGGAAAATTTTGTGGGGACTTTTGAACCTCTCATTTGTACCCCATGTACTTTACATTCAAAGCCACTGCACTTTTTTTTTTAATAACAGTAGGTTATAGCCTACTATAACAGTGACTTTTAGAGACAAATTGACCATCTCGTTGGTTGACTGGCATTATTTGCTTATAGGTCAACAGTAATGCCTGATACATCTTTATTAAATTGCACATTTAAAGGCAGGTCTTGTGAGTACAAAAACCACAGAGGCTAAATTATTAAAGTGAAGAGCATATTTGTTCAGCTGGAAACTAAAGTGTAGTTCACAGATAGGTCTATGGTGCAAATTAGATGTGATCTCATGCTTCAGCAAATGCAAATAAAAAAGCACATGTTTTAGCTGCATTGCGAAATAGCGATGCCTGATTCTTAAACGAGTCGTTTTGTTGTTGTTTTTGTGTCGGATCTTTCAAATTAATCAGTTGAGGCAGTTCACAAAACCGGTCTGACCCCCCTGCCAGATTCTTGCTCTCCTTTTTAGGGACTACAACCTGACTGGTCCCATCCGGGGAGTCAGAATACATCCACGAATAAGACTAAACGATTTGTTCAATAATAGGACCGAATCAGAGCGATTCTCAATGCTTCAAACACACCAAGAACCTACATGTATGATTGGTAATGAGTCGAGAACCGGTGAGAGAGCTGATAGTAAGAGCATTTGAAATGAAATGAAAATAGCCGAATTAATACAAATAAAACATATTGAAATGTGTTACTTTAGGCAGTTTTATCAACACACATGAACTAGAATTTTAGTATTTTTCTATGTAATGTAAATTATATTTAGATTTTAAATGATTTTGTTTTATGATCTGAATCACAAAAAATTACAATAAAGATCATTATTGATTAAACTAAAAACGTGGGACTAGGAGAACGTGAAGTAAAAGAATCACTGAATCATTTTTAAAACAGTCGGTTCGAAAGAACCGATTCGCGGTAATGAGTCGAACTTCCCGCTCGATTGCTCTGTGTCTGTGAGCCACTATATGCGCTGAAAAAAGTAAACAGTCTGACTCGATTAGTAAGACTGCGTGATGCACGCAAACGCGGAAGCGACGGCTTTCACTGGTGGCTTTTGTATACAGTGGATGTGTGCTTGACAATCAAAATTTTAAGCTCGTTTGTCTCTGGAATTGGACGCTTGAGACGCATGCAGCCCGGTGTGCCATGATTCCCATTGCGGTGGTGGTGTGTGTGATGGGCGGGTGGTGTACAGTGTATCTGACGGACACGCTGCTGCGGTCGTCCAGTTCAGTGAAGAACCGCTATGAATCGTGGTTATCCTCTAACGGATTCACTCTCTCTCCCTTCCATATCAAATGGCACACGAGCATCTTCAACCGTCTGTTTGCCAGATGTGCTCATCTCAACCCTCGCTTTCTGTACATCTGGTTCAGTGCTGGTATGGTGTTTGGGGTCCTGGCAATGTTTGGGTCTGTGGTTCTCCTGAGCAAAACGCTGTTGCAGACTTTGAGTCAGATGATGGCAGATTCACCGGAAGGGTCCCACGAACAGGTCTTGCAAGTGGTGGTGCCTGGCGTTAACCTTCCTGTCAGTCAACTGGCCTATTTTTTCATCGCTATCTTGGTCAGCGGAGTCATACATGAGTTTGGCCATGGGGTGGCAGCACTGAGGGAGCAGGTGAGGTTGAATGGTTTTGGCATGTTCATGTTTGTGGTTTATCCTGGAGCATTTGTGGACCTCTTCACAACACATCTGAACCTCATTTCTCCAGTCCAGCAGCTCAGAATATTCTGTGCCGGTGTGTGGCACAACTTCATGCTGTGTGTTGTGGCCCTCAGCTTCCTGTTCCTGCTGCCAATCTTACTGTTCCCCTTGTATTACACTGGAGCAGGGGCGCTCGTCACTGAGGTGGTGGAGGGCTCCCCATCGAGTGGACCTCGTGGGCTGTTTCTAGGAGATCTGGTAACCCAGCTGGAGGACTGTACAGTTCGGGGAGTGCAGGATTGGCACGACTGCATTCAGCATCTATCCCATAGTCCTCAGAAGGGTTACTGCGTTCATACTGCTAAATTGCAGCTCAGCTGGATGGCAGGAAGAGCGTTCAAACGCCTCGATGGCACTATGGAGTGCTGTGGGAACAACAGCATGACCGACCTCTGCTTCTCTTACAGTAATAACGTGGAGAGCAAATTGTTCGCCTGCCTGCCGGTCAGAAAAACCATTGAAGCGAGTCGTACATGTCGTACCAACACAGACTGTCAAACGGACTTCATCCCAAGCTTGTGTTTAATCCCATCTCTGGAGAACCAGACCAGACTGATCCGGGTCAAACACCCACCACAAACAGACATGCTGTTTGTTGGCTACCCTTCACATCTACAGTACTCAGTGAGTCTCACCAACTTTGTTCCTCGTTTGGGCTTTCTTCATCCAGACCTGCCTGTCATGATGGAGACTTTCTGCAAGTATCCTTCCCACACAATCAGTATTTACATCATTCTTAAACATATACCTTGTCTCATTGTCTGGGGCCCTGGCGGTAGTAAACGCTGTTCCATGCTTTGCGCTGGACGGCCAGTGGATGCTCACAGCGTTCCTAGAAGCTATGTTGAGCTCTGTGATCCCAGAGAGGAACAACCGAGAACTAATTGGCTTTTTTTTTCTGCTGGGGGGCAGTGCCCTTCTAGCGGCCAATGTAGCTCTGGGCCTGTGGATGGTCACAGCACGGTAACGCATAGCCATCTCCTCCAGGGGAAATGCTTACCGAAGAACCTTCTTGAACTCATGGAGGAATCAAATGGGTGGTTTTACCTTTGCTGGCCTGGTACTTGCCAGACTTCCCACCCTGAAAGTGCAGCCAGAGGGTCAAGAATGCTGCTGTACCTGAGAAAACGCTTAATCGATAGGTTTGAATGGCTCAGATAGAAACAAGCAGTAAATAGCATCTTGAAGCTGCATGCTTTTACACTGTGACCTTAGGACAGCGCCACTAGTGCCCTCTTTGATAAATACTGTGCATTATCACACATTGTTAAAAGTGTCTGCTTAATCAAGTAAACCCACAAATGACACGATATCAACAAATACATGGAGGATTTTGTGGGCAATACTTGCCTGTTTGGCCTCTCTGTCTTCCTGAAGTACATGGACACACAAGCTATGTGTAGTTTTACATTGTCTGTAGTTCAGTTTTCCACATACCACATCAACCCAAACATACATAAAGCCAATTAATTTGACATCATGACATCATTTAAGTGTACATTCAATAATTTTACATAAAGAAATATAGTCATTTTGAAAAATGTTTTATGTCATGTGCACTTGCATGTAGTGAAGAATTCAGACTTTTTTAGGTTACGTAAGTAACCTAAAAAAAGGGTTACGTTTAGACAACCAGCCAAGTTTGCTCGCTTTTTCTTAGAAACAACTCTGTAATTGAACATTTTCAGCCAACACCAAAAGCATTTCTACAATAGTGGCAGTAACTGAAAACTTTTGCTGTTGCATGATGCTTCATCCACACCACTAGGTTTCAGTATAGAGTCCAAGATGGTTGCCATCAGCTAGCATAGCATCAACCAAAAACTGAGTGAACCTTATCTAAATTGAAATTGAAATGCATATAGTGTGGTCAAAATATACATTTGTACATATAGTGACTAGACACAGCATGAAACTGCACAAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07765 MBTPS2; S2P endopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121179 lncRNA downstream 25499 6731129 ~ 6731257 (-) True G106590
TU121170 lncRNA downstream 42750 6713803 ~ 6714006 (-) True G106581
TU121168 lncRNA downstream 48768 6707784 ~ 6707988 (-) True G106579
TU121046 lncRNA downstream 209531 6545849 ~ 6547225 (-) True CI01000018_06547019_06585316
TU121119 lncRNA downstream 216082 6540436 ~ 6540674 (-) True G106543
TU121279 lncRNA upstream 259308 7024071 ~ 7024676 (-) True G106663
TU121288 lncRNA upstream 260908 7025671 ~ 7033706 (-) True G106672
CI01000018_06730933_06741559.mRNA mRNA downstream 14707 6730347 ~ 6742049 (-) False CI01000018_06730933_06741559
CI01000018_06696391_06705674.mRNA mRNA downstream 51082 6695758 ~ 6705674 (-) True CI01000018_06696391_06705674
CI01000018_06665847_06684600.mRNA mRNA downstream 72156 6665787 ~ 6684600 (-) True CI01000018_06665847_06684600
CI01000018_06639339_06649926.mRNA mRNA downstream 106785 6639207 ~ 6649971 (-) False CI01000018_06639339_06649926
CI01000018_06598234_06605351.mRNA mRNA downstream 150822 6597981 ~ 6605934 (-) True CI01000018_06598234_06605351
CI01000018_06789511_06854837.mRNA mRNA upstream 24532 6789295 ~ 6854837 (-) True CI01000018_06789511_06854837
CI01000018_06881855_06890718.mRNA mRNA upstream 116836 6881599 ~ 6890718 (-) True CI01000018_06881855_06890718
CI01000018_06937758_06953871.mRNA mRNA upstream 171266 6936029 ~ 6953871 (-) True CI01000018_06937758_06953871
TU121056 other downstream 114800 6641872 ~ 6641956 (-) True G106487
TU121114 other downstream 223244 6530447 ~ 6533512 (-) True G106538
TU120472 other downstream 730880 5891336 ~ 6023917 (-) True G105976
TU120471 other downstream 730880 5957606 ~ 6023917 (-) True G105976
TU119553 other downstream 1880917 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046463 True 3026 mRNA 0.43 11 NC_007135.7 25447911 ~ 25461267 (-)