RNA id: CI01000021_05852098_05854690.mRNA


Basic Information

Item Value
RNA id CI01000021_05852098_05854690.mRNA
length 865
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000021_05852098_05854690
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5852098 ~ 5855141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACCAAAGAGAGCTCAGATCCTACTAGGAGCATGCTTCTTATTCCTGGATCCGGCACAAAACCACAGCAGGTCAGACTTGCACAGTCTGAAATAAACCGTCCATCTGTAATCACCTGTGCCCCTACCAGCAACCGGCCATGCAGTCTTTCCAGCTGCCACATGTCCCCTAACAGCTGCACATCTGGATCCACCAACAAGACCAACGCAAACCCTGAGTGTGACCCTGTGATTGAGGAGCACTTCCGCCGCAGTCTGGGCCAGATCTACGAGGAGCCCGTGCCTGTCTCTAACTCAGTGTCCATCACAGGCTCAGTGGATGACCACTTCACTAAAGCACTGGGGGACGCCTGGCTACAGATCAAAGCCAAGGGCAGTGGCGGTACAGCACCGAACCAAGAGGGGCGATGTTAGCCCTGTTCATGTTAGCTCACTTCAGAGGTGTAGTCAAGACCCAGACCATGACTGGACTAAGATTGCAGCATTCATTTCAGTAATATTCAACAGCTGTCTTATTGAAAATAGGAATTTTTCTGTGTATTTGAGCAGCTAAATGCACAAGAGTTAAGCTTAAAGTATACATATGTTGCTGGTCCACGTTCTGCCCGATGCACAGCATGTGAGTACCAAATTGAGTTATCCTTCACGGCTTGTTGAGCTATAAATAACTTTTTAATATAAAACAAGTCATGCTCTTTACGTTTTCCATGTCTCTTTGTCTAATCTGTGAATAACTGTAAGCAGCACTGCCAACAGATATAAACAATATAGCAAAATCTCTATGTACCGACACACTGCTGTGTCAGAGGAAACCTGACATGAAAAAAGTTTGATTGTTGACTTATCCCTTGTTCAGTAAAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135248 lncRNA upstream 4207 5847643 ~ 5847891 (+) True G119087
TU135142 lncRNA upstream 20087 5829290 ~ 5832011 (+) True G118982
TU135104 lncRNA upstream 50701 5796629 ~ 5801397 (+) True G118958
TU135161 lncRNA upstream 56376 5794856 ~ 5795722 (+) True G119001
TU135118 lncRNA upstream 66421 5782581 ~ 5785677 (+) False G118964
TU135251 lncRNA downstream 37165 5892306 ~ 5942271 (+) True G119089
TU135257 lncRNA downstream 44017 5899158 ~ 5905601 (+) True G119094
TU135263 lncRNA downstream 101501 5956642 ~ 5957424 (+) True G119100
TU135254 lncRNA downstream 113719 5968860 ~ 5969251 (+) True G119091
TU135261 lncRNA downstream 116626 5971767 ~ 5972043 (+) True G119098
CI01000021_05808363_05825783.mRNA mRNA upstream 26260 5808193 ~ 5825838 (+) True CI01000021_05808363_05825783
CI01000021_05791905_05792161.mRNA mRNA upstream 59043 5791905 ~ 5793055 (+) True CI01000021_05791905_05792161
CI01000021_05786615_05790109.mRNA mRNA upstream 61160 5786615 ~ 5790938 (+) True CI01000021_05786615_05790109
CI01000021_05748401_05769219.mRNA mRNA upstream 82879 5748094 ~ 5769219 (+) True CI01000021_05748401_05769219
CI01000021_05700274_05719435.mRNA mRNA upstream 131336 5700274 ~ 5720762 (+) True CI01000021_05700274_05719435
CI01000021_05980937_05993618.mRNA mRNA downstream 125796 5980937 ~ 5993924 (+) True CI01000021_05980937_05993618
CI01000021_06009872_06060664.mRNA mRNA downstream 154731 6009872 ~ 6060871 (+) True CI01000021_06009872_06060664
CI01000021_06069397_06074082.mRNA mRNA downstream 214101 6069242 ~ 6074149 (+) True CI01000021_06069397_06074082
CI01000021_06077681_06095590.mRNA mRNA downstream 222268 6077409 ~ 6095726 (+) True CI01000021_06077681_06095590
CI01000021_06266751_06267607.mRNA mRNA downstream 409825 6264966 ~ 6268158 (+) True CI01000021_06266751_06267607
TU134547 other upstream 962590 4842733 ~ 4886292 (+) True G118432
TU133514 other upstream 1816422 4033000 ~ 4035676 (+) True G117493
TU133500 other upstream 1894346 3956146 ~ 3957752 (+) True G117484
TU133183 other upstream 2523865 3269144 ~ 3328233 (+) False G117202
TU135922 other downstream 945003 6800144 ~ 6860606 (+) True G119701

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042635 True 3553 mRNA 0.40 5 NC_007134.7 4777612 ~ 4785912 (+)