G119094


Basic Information

Item Value
gene id G119094
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5899158 ~ 5905601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135257
GTTTAATAAAAGTAGTATATCTTCATTCATTCTGCATCACACATCTTCATTGTGGATTAAGCTACAGCAACCCCATTATAGAACCATTTTAAAAGGTACACTTTTGTACCTTATTTACCTCTTAAGACTGCATATTAGTGCTTCATCTTAAATATACATATTAGTGCCTAAATGGTACATGTTAGTACCTTCTGAAAAGGTACCACCCTAGTGAGAGCTTTAGTAAAAAAATTTTCTGAAAGAAAAGCAAAATGGAACTTTCACAATGCCCAATCAGAGCAGCATAATGTCATAAACTATGGCAACACTCTCCCTAATGTAGAGACATTTACATATCTCATGTAGGTAATTTGTTTTGTCAAGTCCTGTTAGCAAAATAGTAAATGTCAGAAGAGCTGACAGTGGCCAAATTGTCAGATTTAAAGAAAAGGGAGACTGACAAGGAAAATTGTGCATTTGCAAAAGACTGGAAGACAACTATGCATTTATTCTAACACAAAAACGCACCAAACCTTTGTGCTTAATTTGCGCCAAAATGCAACTGTTAAGAGTGGTAACAATAAGCACCACTCATCAAAGAACACGTATTTTGAGCAAAATTACCCATAGAACATGGAGGTGATAAAAAAAATAATAAAATAAAAAAAACAATGAAAAGAGAGAATCATATTGAGTATCTAGACGTATTATAGTCCTGTGGAGTCTGTGGACCTTCAGCTAAGTGGAAAATTGTTGAGTGGACCACAAAGATTTAAATTTGAGTACTCCTGATCTAGAGCAAAGACATGGAAATGTCATTCAACCTAAAAAAAAACAAAAACGTGTGATAGGATGGTTGTGAAGAGGGTAAACATGATAAGTATGGTGGCTGAGAGAGCTCAGTGCACTGCAACTGAAGAAAACACATGCAAATAGAAAAAACACCAGCAAATTAAGAAAACATCTTCATCAGTTTGACAACACATGTGCTGCAAATAATCACAATGCAACCAAATACAGAAACACGCTGCAAATAGCACAGACGACAATGGAAATATTTCAAGAAGACCCCAATAAGTGACGAACCCATGCTTATTTTTCGCTTATTTTTGCTTATTGAACTCGTCAGTGGTGTTGTTGATGACCTGAAAGGTGAGTTTTTTTTGTTTATTTTAACATCCTCATGTGCGTTGTGAGTATTTGCAGCACATTTCTGTATTTGGTTGGGTTGTGAAATTTTTGATGTTTTCTTAATTTTCTGGTGTTTTTTTTTTTTTTATTTGCATGTGTTTTCTTCAGTTGCAGCACTTTGAGCTCTCTCAGCCACCACAGATAAGGACAGAAAGGGTTGAACTGGATTCAAAATTGTGAAGGCTTCATTGTATATCAGACACATGGCTCTCAGAGATGAGCAGCTAATACAATTTCCCAGGCAGCTGCTGATTGACAGATTGGATTAAGGGGCAAAAATGCCAAGAAGATCCATGGAAAATCAGGCATGTCACACTACCAGACAGCAAAGGTGGCAAAATCCTACCAATGGCTTTAGTTGACGACAGAGGGAAAGCAGAAGCACTAATGATGGCAACAGACATATCGGGGGACATATACAGAGTTAACAATGCCAGTTACTCAAGGTACAGAGACTCTAGAAGAAAGCTCATGAGACTATTCAGCACCTGCAGGCAACAGCATCAAACACTAAATTCCTGACCACGTCATCAAGAATAATGCCCTAAAAAAAGACAGTGGTGATGTAGAAATCCCAAATGACAATAGCATAAACAGGAAAGAAGAGCTTGAGAAATATAAGCTATAGGCAAAACAAGGCCAATCTAGTGCTGAAGGTTAGGAACTAAATGAATGAATGACATATCAATATCAACGAAAATGACAATCTCAAGCACTATTTTTATCATCATTGTCTCCTAAGGACACAACCTTTAATTTATGATGGTTACCAACGTCAGTTTGTAATTAAATTCTTTTTCCTTACATACACGTTAATTGGCCGGTCTATTCAAAATTCAAGATTTACTGACATGGTAAAACAAAACTTTGCACATACATACACACACATTTGCACACATATGCACTTAACAGAAATATACAATATACAAATGTATACAAAAGTATTTTTGCAACAGTAATGTCACTGATGTCATTTAGCAGTCAGAGCGGTCCTGTCCAACTGGATGCACTTTTGTCATGACAGAATTATTGATGACCATTTATGACTGATGACCAAAGCATTTTTGTCCATTTTTATAATGCTGTACAGTGCAAAGGACGAGCACAATGCAAAATACAGACACAATGTAACAGGACGTAAAAAGGACTCACCATAGCACCAGGAGATTGAGATACACTCAAAGAACACCAGGAAAAGCAGACACATCCCACTGGCTGAGTAATAGTCGAAGAGTTTAAACACATAGAGGCCACCCTAACACAAGAAAAACACAAGTGTGTAATATAAGTCCCTGTAGCTGGCAATCATATTAGTGCACAGTCTCATCATCACCTCATCTGCTTTATTCAAGTCTGATGTACCTGTGTGATATTGGACAGCCCAATGGCGTAGGACACAATGCAAACACATGCAATGAAAATCTCTCTTCTGTTCCTGAGCAGCCGCGGGAACTCATCCACCAGAGCAGTGATGAAGCCCTCCACTGTGCAGAACTGCAAACCAATGTCAACAATGCTGCTGTAATATTGCATTTATATGGCAAAATTGTTCAAAGGTTGTTTTAACATTGTTTCATGGCTGTTTGTTGTTGTAATAGCACAGCTATTACATAGTGACTTTGAACATGGCTTATCTAATCAGATTTTAGCTGTTTTATTTTGGTTTTATATGACTTTCCAACAAAGAAAACAAGAAGAATAACAACAATAAAAACCAACACAACTCAGTGACTTTAAAACACACACAATTTACTAAATTTGGTATTTTTTATGCAACAGGGTTGGGATTCAGTTTGGTTTAATTTGAACATTGCCACTAAACAAAACCAAAACTCCAGCTTAATAGATAAAGAACATCAATTTAAAATCATGTAGCCATAAAGGCAGAAATCAGCATCAAAAGATTTTTTGGACTCAAGGCTAATTAAGTTTTTTAATGCTCCGTATGTTTCCTTGTGTGGCCACCAGGGACACCGTCACTGATGCCGGAGTACCTAGCAGATCCGTTCACTTCTGTTTCTAGGTCAGAGCTTGAATATGTGATATTCTCACCTGACTGTCGATTCCCAGCATCAGCAGCATGGAGAAGAAGAGAATAGCCCACAATGGTGAGACGGGCAACTGCGTCACAGCTTCTGGGTAAGCTAAAAATGCCAAACCAGGACCTGCGCAAGGCATGAAAAAAAAAGCATTTCAATTATCTGAAAGAAATATCTAGATATTAAATGATGTAACTTTCTGAAATACCACTACTTCAAAGTGCAATATTATAATTATGTAAAATGAGTTGATTACCGGATGCAGCTACATGAGCAATTGGTCTCTTTGTCACATGTGCCATGAAGCCCACAATAGAGAAAATCACAAATCCAGCAAACATACTAGTGAAGGAATTTATACAGCACACGATAATAGAATCCCTGTACACATTGTTATTGAAAGGGTTGTAGCTGCCCAGAGCAATAAGGGAGCCTAGACCCAAACCATAGGAGAAGAAAATCTGTGTTGCAGCATCCAGCCAAACCTCAGACTCCTTAAGCTTCTGAAAATCAGGAGTGATATAGAACAAGATTCCCTCTTTAGCCCCAGGCAGGGTCACTCCACGGATAAACAAAATGAGCAACATGAAGTAGGGGTAGGTGGCAGAGAAGTAAACAACCTTTCCGGTCCAGCTAACACCTTTCCAGATACAGAAGTACACGAGGACCCAGGCAATGGCCAGTGTTATTGCAAGTGGAACACGAATTTCACCAGGTTTTTCTAAGCCATCAGTCATTTGATGCACATTGCGTTCCCAAAACTCCATGACAGCACTGGTGAGATTGGTGGTGTCTACTATGCTGTAGTTTGTATAACATCTGTCTGTGTTCCATGGATTGTTACACGTTTTCCATGGAAGCTCAGTGGTAAAAGAGTTGTATAAGTAGTACAGGGCCCAGGCAATGATGACAATGTAGTAAATGTTCAGCCAGAATGAGAGAACAGCAGCCGCAAGACCAACACCTTTGAACATTGGAGCTAGTTTCCAAACCCCAAGGCCGCCAATGGAAGTGTATTGTCCAAGAGCGCATTCAAGAAAAAACAGAGGAACTCCCGCAAAAACTAGCGTCAAAAAGTAAGGAATCAAGAAAGCCCCTCCGCCGTTTTTCCCGCACAGATAAGGAAATCTCCACACGTTGCCCAGGCCGATGGCGTAGCCCACACATGACAGGAGAAAATCAAATCTCCCACCCCAAGTTTCTCTTTCTGGAATGTCTTTCTTCTTCTTCTCCGGTTTGGCGTCCTCTGATTTGGGTTTGTCGTTAGTTGTGATCTCGTTGAGTTCCGTCACAACTTGTCCGTCGGTGTTTTTGGTGTTGTTTGTCGCCATGTCTCTGATTTCAGACAGCAGCAGAGATCCACACAAACCCCCGATCGAACTCGACACAGTTTCAGTTAACAGTGAATTTGGATTCTTTTCCAAAGGGAATATGTCCGTGTGTCATGCAGTGAGGTGTCCGTAGATTCCTCTCTAAGTTGTAAACTTCCAGTATGACTATAAACGAGTGTTGTGTCCATGTAAAGCGGTCCAGCGGGAGCTGTCCACGGGCGAGTGGTGCTGAATCCACCGAGCAGCGACTGTCTGAGATCAGCAGCTACTCAACATTTCCAGAGCGTCAATGTCATGTGAAAGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135257 True 4847 lncRNA 0.40 9 5899158 5905601

Neighbor

gene id symbol gene type direction distance location
CI01000021_05852098_05854690 NA coding upstream 44017 5852098 ~ 5855141 (+)
CI01000021_05808363_05825783 RAF1A coding upstream 73320 5808193 ~ 5825838 (+)
CI01000021_05791905_05792161 NA coding upstream 106103 5791905 ~ 5793055 (+)
CI01000021_05786615_05790109 NA coding upstream 108220 5786615 ~ 5790938 (+)
CI01000021_05748401_05769219 NA coding upstream 129939 5748094 ~ 5769219 (+)
CI01000021_05980937_05993618 NA coding downstream 75336 5980937 ~ 5993924 (+)
CI01000021_06009872_06060664 NA coding downstream 104271 6009872 ~ 6060871 (+)
CI01000021_06069397_06074082 FBXO30B coding downstream 163641 6069242 ~ 6074149 (+)
CI01000021_06077681_06095590 NA coding downstream 171808 6077409 ~ 6095726 (+)
CI01000021_06266751_06267607 NA coding downstream 359365 6264966 ~ 6268158 (+)
G119087 NA non-coding upstream 51267 5847643 ~ 5847891 (+)
G118982 NA non-coding upstream 67147 5829290 ~ 5832011 (+)
G118958 NA non-coding upstream 97761 5796629 ~ 5801397 (+)
G119001 NA non-coding upstream 103436 5794856 ~ 5795722 (+)
G118964 NA non-coding upstream 113481 5782581 ~ 5785677 (+)
G119100 NA non-coding downstream 51041 5956642 ~ 5957424 (+)
G119091 NA non-coding downstream 63259 5968860 ~ 5969251 (+)
G119098 NA non-coding downstream 66166 5971767 ~ 5972043 (+)
G119099 NA non-coding downstream 69553 5975154 ~ 5979511 (+)
G119395 NA non-coding downstream 192500 6098101 ~ 6098302 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 1009650 4886337 ~ 4893474 (+)
G117493 NA other upstream 1863482 4033000 ~ 4035676 (+)
G117484 NA other upstream 1941406 3956146 ~ 3957752 (+)
G117202 NA other upstream 2570925 3269144 ~ 3328233 (+)
G117237 NA other upstream 2655794 3237854 ~ 3243364 (+)
G119701 NA other downstream 894543 6800144 ~ 6860606 (+)

Expression


Co-expression Network