G118982


Basic Information

Item Value
gene id G118982
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5829290 ~ 5832011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135142
GTTCAGAGTTTTATTTTTATTGCTGCTTATTTAATTTGCAATTCTGCAATAATATTGTTAACAAGAAAAGAATTCTCCACATTTTTGCAACCCAAAAATGACTGATGTCCAGTAATATAGCTTTCAATATAGCAAATACATTTTTTATATTTTATAACACATTTACAATACTAGAAGTGCAAAAATGATATATATATATATATATTATTTCAACAGTGATCACAAAAGAAACAAAAAATACACACCTCACTGTTTAACACACAATGGCACACAGATTTGATCATGCATTTAAAGTATTCATTTACGTTTTATAGTCTCCATTCTTTCACACACACACACACACACACACACACACACCCTTTGTACGCAATTTACTGAAACATAACAGACATAAGACAAGAAAATATATATATATATATAAAGTACAGTTGAAAGAGTGGCACTGAACACTAGGCACAATCTGCTGTATCACCACACACAACAACCCTGAAGAGAAAACCGCTTCACATAGAAACAAAAGCAACCATCACAAGCGCACAACAGTGAGAGTTACACAGTACAGACTGAAATACAAACCAGGCCCACACTAAGACTTTTCTTACTGATTATTTGTTCACTTGCACCTTGGGCCACTGTCTGAATGTTCGAACACATCTTGTCAGAAGTTTAACTGGGTCGAGTCCTCATGGTTATGTTAGTTTGCTTGCACTAATTTTGGTCCCACAGCAACACCATTACAGTCAAGAATGTACTGCAAACACCCCTGTGGAGGAGCTTTCTGTGGCGGGCCGTTCTTAACGTCAACCAAAGCGTCCTTTTCAACAGTCATCTGAAACAAAGAAACAAACATATCTGCTCACACATGTGACATTCGTAACAGAGATTGTGATTTTAGCATCCGAGCTGCTGACGTGCTTGTACTTTATGTTCTGCACTATATAAAACATTCAACTTGCAAAATGTTCTCCTAGCAAATGTAAAGAAGTAGCTTGAACATATATTTTGTTTTAGTTGGAGTCCATTTATTATTTTATGTATACAGAACAAGAATACTCTAAACAGATGTTAGCTATCATACAGTTCAGAGCTCAAATTACTACTTAATTAAAATTTATCATCAGTTATCACCGTGTTAAAGATTTGTGTTGAGGTAAATGTGCATCTCATTGGAAATTTTAGATTTAATATATTGGACTATTGAGGTAATATATTTTCCTCAGTAGGGAAAAAAAAAAAAAATTGCTAAACGCTAAACTGTCACGCCAGCCAACCAGAGTGCCTATGATAGCCACCAGAGGGCACTCCTTCTGTCTTTGTTATCTCACCATGGACTGCATTTCCCATAACCCATTGCCCAGACTCATTATGCCTGATTACATCCACCTGTGCCTCATTATCGGTGTTAACCCTGCCTACATCAGCCCTGTGTTTTCTGTTATTCATTGCGAAGTCTTGTATGTTACACTGCATTTCTGAGTGTTATCCTGGTTTCCTGTGTCTTGTTTTTTTTCAATTATCTGCCTGTTTTCTAGATTGCCCTTTTGCCTGTGTTTTCTGCCCAGTTGCTCATTTGGATTGTTTGACCTGTGTGTTTGACCTTTAGCCTGGTATATGGATTACGATTCTGGATTGTCCCAATAAAACTGCATTTGGTTCTTCAACCCAACAGAAACATTTAGTTGCTTAGGCTGAATTTTGGTGATCAAACTCATCTTTGATCACCAAAATGGCATATTCAAACTTTTTTTTTTCTCTGTAAAAACATTTATTCATGCCTTAAAATAGCTTGAATGTAACTCTACACCCTTGCTTCATTTCGTATATGCAGACTCATGAATATGCAAATTAGCCAATTAGCCTCGCCTCCACTCACTCACAGCAGCTCAGAATACCTGATCCACTCTGTCAACTTTATTGTAGTAAACGCTGCACAATGGCAAGTGGAAATATTGGTTTAATTCAGCCATATATGTTTGAACCAGAAACTGATTCAGAAGAAGAGGAAGAGTGAGTTATACATGCTCATCCCATGTATCAGAATGATATTTCAAGTATCAGTCTTTACAACGTCAGACACATAACGGTAATTAATATGATTGGCCTTTTGCTTGACTACGTTATCAAACAGCTAAAAATGTGTTGCTAATGTTACACAAACCATGTTCCCGTTCGCCATGTCAGAGTCAGACAGCTGCCTTCTAATAATCATTATCCTTACAAATGCTTTGAACAACTCAGAATGTCGGTGGAGAAAGGCATATAGTTCATCATAACATCGTAATATACATCATACACCTGTTATATTGGTAAATCTACCCGGTTTTTAATATCAACAGAAAAATATACCAGAATAACCTGGCTTCTCTCGAGTCTCCCCTGTTTCAGAGAGCATAATTGATTGACGTGATCAGTTGAGTTAATTGGGGGGAAAAAGGAGTATGAAAAGTTGCTTTTTTTGTAAGTCAGCTTTGTTTAGTTTTTTCTTTGCAGTGTGTTGTTACATCATGCACCTGTTTTGGTTGAATAGCAGTTGGTCTTTTGTGATTTTGTGCCATAACATGATTCATTTTGGCAATGACCATGTCTGCGATTAGCTGCTGGTCTTCAGCCTGATGGTCCCCCACTAAAGGCATAGACGAACCCATTACCTAATGAAAAAACACAGGTATTAGTAATATTACATGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135142 True 2688 lncRNA 0.37 2 5829290 5832011

Neighbor

gene id symbol gene type direction distance location
CI01000021_05808363_05825783 RAF1A coding upstream 3452 5808193 ~ 5825838 (+)
CI01000021_05791905_05792161 NA coding upstream 36235 5791905 ~ 5793055 (+)
CI01000021_05786615_05790109 NA coding upstream 38352 5786615 ~ 5790938 (+)
CI01000021_05748401_05769219 NA coding upstream 60071 5748094 ~ 5769219 (+)
CI01000021_05700274_05719435 NA coding upstream 108528 5700274 ~ 5720762 (+)
CI01000021_05852098_05854690 NA coding downstream 20087 5852098 ~ 5855141 (+)
CI01000021_05980937_05993618 NA coding downstream 148926 5980937 ~ 5993924 (+)
CI01000021_06009872_06060664 NA coding downstream 177861 6009872 ~ 6060871 (+)
CI01000021_06069397_06074082 FBXO30B coding downstream 237231 6069242 ~ 6074149 (+)
CI01000021_06077681_06095590 NA coding downstream 245398 6077409 ~ 6095726 (+)
G118958 NA non-coding upstream 27893 5796629 ~ 5801397 (+)
G119001 NA non-coding upstream 33568 5794856 ~ 5795722 (+)
G118964 NA non-coding upstream 43613 5782581 ~ 5785677 (+)
G119073 NA non-coding upstream 147470 5681603 ~ 5681820 (+)
G119072 NA non-coding upstream 148608 5680399 ~ 5680682 (+)
G119087 NA non-coding downstream 15632 5847643 ~ 5847891 (+)
G119089 NA non-coding downstream 60295 5892306 ~ 5942271 (+)
G119094 NA non-coding downstream 67147 5899158 ~ 5905601 (+)
G119100 NA non-coding downstream 124631 5956642 ~ 5957424 (+)
G119091 NA non-coding downstream 136849 5968860 ~ 5969251 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 939782 4886337 ~ 4893474 (+)
G117493 NA other upstream 1793614 4033000 ~ 4035676 (+)
G117484 NA other upstream 1871538 3956146 ~ 3957752 (+)
G117202 NA other upstream 2501057 3269144 ~ 3328233 (+)
G117237 NA other upstream 2585926 3237854 ~ 3243364 (+)
G119701 NA other downstream 968133 6800144 ~ 6860606 (+)

Expression


Co-expression Network