CI01000021_05852098_05854690


Basic Information

Item Value
gene id CI01000021_05852098_05854690
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 5852098 ~ 5855141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_05852098_05854690.mRNA
ATGACCAAAGAGAGCTCAGATCCTACTAGGAGCATGCTTCTTATTCCTGGATCCGGCACAAAACCACAGCAGGTCAGACTTGCACAGTCTGAAATAAACCGTCCATCTGTAATCACCTGTGCCCCTACCAGCAACCGGCCATGCAGTCTTTCCAGCTGCCACATGTCCCCTAACAGCTGCACATCTGGATCCACCAACAAGACCAACGCAAACCCTGAGTGTGACCCTGTGATTGAGGAGCACTTCCGCCGCAGTCTGGGCCAGATCTACGAGGAGCCCGTGCCTGTCTCTAACTCAGTGTCCATCACAGGCTCAGTGGATGACCACTTCACTAAAGCACTGGGGGACGCCTGGCTACAGATCAAAGCCAAGGGCAGTGGCGGTACAGCACCGAACCAAGAGGGGCGATGTTAGCCCTGTTCATGTTAGCTCACTTCAGAGGTGTAGTCAAGACCCAGACCATGACTGGACTAAGATTGCAGCATTCATTTCAGTAATATTCAACAGCTGTCTTATTGAAAATAGGAATTTTTCTGTGTATTTGAGCAGCTAAATGCACAAGAGTTAAGCTTAAAGTATACATATGTTGCTGGTCCACGTTCTGCCCGATGCACAGCATGTGAGTACCAAATTGAGTTATCCTTCACGGCTTGTTGAGCTATAAATAACTTTTTAATATAAAACAAGTCATGCTCTTTACGTTTTCCATGTCTCTTTGTCTAATCTGTGAATAACTGTAAGCAGCACTGCCAACAGATATAAACAATATAGCAAAATCTCTATGTACCGACACACTGCTGTGTCAGAGGAAACCTGACATGAAAAAAGTTTGATTGTTGACTTATCCCTTGTTCAGTAAAGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_05852098_05854690.mRNA True 865 mRNA 0.46 3 5852098 5855141

Neighbor

gene id symbol gene type direction distance location
CI01000021_05808363_05825783 RAF1A coding upstream 26260 5808193 ~ 5825838 (+)
CI01000021_05791905_05792161 NA coding upstream 59043 5791905 ~ 5793055 (+)
CI01000021_05786615_05790109 NA coding upstream 61160 5786615 ~ 5790938 (+)
CI01000021_05748401_05769219 NA coding upstream 82879 5748094 ~ 5769219 (+)
CI01000021_05700274_05719435 NA coding upstream 131336 5700274 ~ 5720762 (+)
CI01000021_05980937_05993618 NA coding downstream 125796 5980937 ~ 5993924 (+)
CI01000021_06009872_06060664 NA coding downstream 154731 6009872 ~ 6060871 (+)
CI01000021_06069397_06074082 FBXO30B coding downstream 214101 6069242 ~ 6074149 (+)
CI01000021_06077681_06095590 NA coding downstream 222268 6077409 ~ 6095726 (+)
CI01000021_06266751_06267607 NA coding downstream 409825 6264966 ~ 6268158 (+)
G119087 NA non-coding upstream 4207 5847643 ~ 5847891 (+)
G118982 NA non-coding upstream 20087 5829290 ~ 5832011 (+)
G118958 NA non-coding upstream 50701 5796629 ~ 5801397 (+)
G119001 NA non-coding upstream 56376 5794856 ~ 5795722 (+)
G118964 NA non-coding upstream 66421 5782581 ~ 5785677 (+)
G119089 NA non-coding downstream 37165 5892306 ~ 5942271 (+)
G119094 NA non-coding downstream 44017 5899158 ~ 5905601 (+)
G119100 NA non-coding downstream 101501 5956642 ~ 5957424 (+)
G119091 NA non-coding downstream 113719 5968860 ~ 5969251 (+)
G119098 NA non-coding downstream 116626 5971767 ~ 5972043 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 962590 4886337 ~ 4893474 (+)
G117493 NA other upstream 1816422 4033000 ~ 4035676 (+)
G117484 NA other upstream 1894346 3956146 ~ 3957752 (+)
G117202 NA other upstream 2523865 3269144 ~ 3328233 (+)
G117237 NA other upstream 2608734 3237854 ~ 3243364 (+)
G119701 NA other downstream 945003 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021444 vgll4a coding NC_007134.7 CM002907.2 4777348 ~ 4849945 (+)