RNA id: TU133635


Basic Information

Item Value
RNA id TU133635
length 364
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G117608
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4296745 ~ 4297329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCAAAACCCGGAAGCCAGTTAGCATTTTAGTACTTTCGGTTCCATCGCCTAAAGTCTATGGGTTTTTTGAATGGGTTTTTGCTAAATCGCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATCTATGACATAAAACACACCAGTTATAACCCACTTGTGATTTTTTAAACCTTTATTGTGTCTTGAAAACGGCGGTTGCTAACAAATTGCTAAAAGGGACTACTTCCTTTGGCGGGGACTTTAGATGTCATCATGACAAACAGGACATTTAGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133448 lncRNA upstream 52667 4242624 ~ 4244078 (+) True G117435
TU133613 lncRNA upstream 56906 4239627 ~ 4239839 (+) True G117587
TU133609 lncRNA upstream 87152 4209172 ~ 4209593 (+) True G117583
TU133606 lncRNA upstream 92594 4203915 ~ 4204151 (+) True G117580
TU133594 lncRNA upstream 125566 4170966 ~ 4171179 (+) True G117568
TU133678 lncRNA downstream 96119 4393448 ~ 4393779 (+) True G117638
TU133681 lncRNA downstream 103956 4401285 ~ 4401498 (+) True G117641
TU133684 lncRNA downstream 109635 4406964 ~ 4470905 (+) True G117644
TU134483 lncRNA downstream 301219 4598548 ~ 4598759 (+) True G118374
TU134514 lncRNA downstream 336173 4633502 ~ 4633936 (+) True G118405
CI01000021_04259458_04263656.mRNA mRNA upstream 32639 4259157 ~ 4264106 (+) True CI01000021_04259458_04263656
CI01000021_04219242_04237829.mRNA mRNA upstream 58738 4219187 ~ 4238007 (+) True CI01000021_04219242_04237829
CI01000021_04087145_04091630.mRNA mRNA upstream 204919 4085974 ~ 4091826 (+) True CI01000021_04087145_04091630
CI01000021_03793387_03846383.mRNA mRNA upstream 450362 3793387 ~ 3846383 (+) True CI01000021_03793387_03846383
CI01000021_03640760_03747887.mRNA mRNA upstream 548858 3640760 ~ 3747887 (+) True CI01000021_03640760_03747887
CI01000021_04436103_04476829.mRNA mRNA downstream 138498 4435827 ~ 4477311 (+) True CI01000021_04436103_04476829
CI01000021_04576127_04585164.mRNA mRNA downstream 278798 4576127 ~ 4585311 (+) True CI01000021_04576127_04585164
CI01000021_04614553_04621970.mRNA mRNA downstream 316436 4613765 ~ 4622428 (+) True CI01000021_04614553_04621970
CI01000021_04755472_04758504.mRNA mRNA downstream 458143 4755472 ~ 4758654 (+) True CI01000021_04755472_04758504
CI01000021_04763908_04787185.mRNA mRNA downstream 466579 4763908 ~ 4787967 (+) True CI01000021_04763908_04787185
TU133514 other upstream 261069 4033000 ~ 4035676 (+) True G117493
TU133500 other upstream 338993 3956146 ~ 3957752 (+) True G117484
TU133183 other upstream 968512 3269144 ~ 3328233 (+) False G117202
TU133182 other upstream 968512 3324272 ~ 3328233 (+) True G117202
TU133219 other upstream 1053381 3237854 ~ 3243364 (+) True G117237
TU134547 other downstream 545404 4842733 ~ 4886292 (+) True G118432
TU135922 other downstream 2502815 6800144 ~ 6860606 (+) True G119701

Expression Profile