RNA id: TCONS_00003001


Basic Information

Item Value
RNA id TCONS_00003001
length 1071
lncRNA type sense_over
GC content 0.56
exon number 7
gene id XLOC_000004
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27690 ~ 34330 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGACAGTGTGGCACCGCTGGATGAAGATGAGGAGGAAGATGTCTGAACCTCACGGCGAGGCGGGAAACGAGATGCCGAACAAAAAGCAGAAACTGAGCAGCGACGAGAACAGCAACCCCGACCTGTCTGGAGACGACAATgatgaTGCGGTCAGCGTGGAGAGCGGCACACACCCCGAGCGTCCCGACACTCCCACCAACACAGCGAGCGCTCCGGGCAGGAAGAGCTGGGGGAAGGGGAAGTGGAAGTCCAAGAAGTGCAAATACTCCTTCAAGTGTGTGAACAGCCTAAAGgaggatCATGGTCAGCCGCTGTTTGGAGTTCAGTTCAACTGGCACAGCAAAGAAGGAGATCCGCTGGTGTTCGCTACTGTGGGCAGCAACAGAGTCACGCTGTACGAGTGTCATTCTCAGGGAGAGATCCGGCTGCTGCAGTCCTACGTGGACGCTGATGCTGATGAGAACTTCTACACGTGTGCGTGGACGTTCGACTGCAGCTCCAGTCACCCCCTGCTGGCTGTCGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATCACCATGCAGTGTGTGAAGCATTATGTTGGTCATGGGAACGCCATCAACGAGCTGAAGTTTCACCCCAGAGACCCGAATCTGCTGCTGTCCGTCAGCAAAGGTAAaccagctccacacacacacacacttcagcagttgacccatatgtgtgtgtgtgtgtgtgtgcgtttcagATCATGCTCTGCGTCTGTGGAACATCCAGACAGACACACTGGTGGCCATCTTTGGGGGAGTGGAAGGACATCGGGACGAGGTGTTGAGTGCTgacttTGACCTGCTGGGGGAGAAGATCATGTCGTGTGGGATGGATCACTCGCTGAAGCTGTGGCGGCTGGACTCTGAGCGTCTGCAGCGGGCCATACGTGGATCCTACGAGTACAACCCTAGCAAGACCAACCGGCGAGTGCTCACTGTATAGGGCTCTTCACTGCCTAGTGCTGTACCCTGTCTAGTGCCCTCAGCAGTGCTCTGActcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006342 chromatin silencing biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016571 histone methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0046976 histone methyltransferase activity (H3-K27 specific) molecular_function
GO:0042054 histone methyltransferase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003000 lncRNA upstream 7483 18716 ~ 20331 (+) False XLOC_000002
TCONS_00000009 lncRNA upstream 7483 18747 ~ 20331 (+) False XLOC_000002
TCONS_00000007 lncRNA upstream 7851 18716 ~ 19963 (+) False XLOC_000002
TCONS_00000004 lncRNA upstream 12751 14167 ~ 15063 (+) False XLOC_000001
TCONS_00000017 lncRNA downstream 4374 36727 ~ 38446 (+) True XLOC_000005
TCONS_00000021 lncRNA downstream 94913 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000022 lncRNA downstream 94947 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000023 lncRNA downstream 98274 130627 ~ 131221 (+) True XLOC_000008
TCONS_00003002 lncRNA downstream 124439 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000011 mRNA upstream 559 25585 ~ 27255 (+) True XLOC_000003
TCONS_00000008 mRNA upstream 4425 18716 ~ 23389 (+) False XLOC_000002
TCONS_00000010 mRNA upstream 4641 18786 ~ 23173 (+) True XLOC_000002
TCONS_00000006 mRNA upstream 11542 15062 ~ 16272 (+) True XLOC_000001
TCONS_00000002 mRNA upstream 13756 11992 ~ 14058 (+) False XLOC_000001
TCONS_00000016 mRNA downstream 4199 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000018 mRNA downstream 77445 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000019 mRNA downstream 87607 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000020 mRNA downstream 94897 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000024 mRNA downstream 103550 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000003 other upstream 14557 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 227687 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 481660 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 505236 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 544091 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1186338 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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