RNA id: TU140045



Basic Information


Item Value
RNA id TU140045
length 226
lncRNA type intronic
GC content 0.41
exon number 1
gene id G123338
representative True

Chromosome Information


Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2788014 ~ 2788239 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAGATCCTCGCTGTAGAACAGCACCTCTTCAACAGACGGCATCACAAGCTGCTATTGTGAGCTCCCCTGCCATGTTCCGGGAAGAAGACATACAAGAAGCTGTGCTTGTGAGGTGGCCATCAAAAGAGCTCAATGCAGCCACTGATTTTATATTGTTCATACAAAGCAGCATCACTAAGATATTTTTTAAAAGTTCTGATCTATTCTCTCTTATTGTTATATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140041 lncRNA downstream 4042 2783671 ~ 2783972 (-) True G123334
TU140029 lncRNA downstream 5034 2782030 ~ 2782980 (-) True G123322
TU140031 lncRNA downstream 8589 2778458 ~ 2779425 (-) True G123324
TU139947 lncRNA downstream 94996 2649850 ~ 2693018 (-) True G123243
TU139963 lncRNA downstream 163179 2624595 ~ 2624835 (-) True G123256
TU140046 lncRNA upstream 677 2788916 ~ 2789147 (-) True G123339
TU140024 lncRNA upstream 1370 2789609 ~ 2789843 (-) True G123317
TU140027 lncRNA upstream 1937 2790176 ~ 2790396 (-) True G123320
TU140026 lncRNA upstream 3207 2791446 ~ 2791674 (-) True G123319
TU140047 lncRNA upstream 4098 2792337 ~ 2792766 (-) True G123340
CI01000024_02771915_02777060.mRNA mRNA downstream 10954 2771806 ~ 2777060 (-) True CI01000024_02771915_02777060
CI01000024_02761265_02771248.mRNA mRNA downstream 16766 2760852 ~ 2771248 (-) True CI01000024_02761265_02771248
CI01000024_02712596_02739960.mRNA mRNA downstream 48054 2711873 ~ 2739960 (-) True CI01000024_02712596_02739960
CI01000024_02659912_02681156.mRNA mRNA downstream 103915 2659660 ~ 2684099 (-) False CI01000024_02659912_02681156
CI01000024_02597194_02605289.mRNA mRNA downstream 182725 2596751 ~ 2605289 (-) True CI01000024_02597194_02605289
CI01000024_02829108_02838763.mRNA mRNA upstream 40407 2828646 ~ 2839196 (-) True CI01000024_02829108_02838763
CI01000024_02849288_02866286.mRNA mRNA upstream 60861 2849100 ~ 2866404 (-) True CI01000024_02849288_02866286
CI01000024_02939122_02964449.mRNA mRNA upstream 150144 2938383 ~ 2964449 (-) False CI01000024_02939122_02964449
CI01000024_03048421_03049271.mRNA mRNA upstream 259925 3048164 ~ 3049529 (-) False CI01000024_03048421_03049271
CI01000024_03060967_03068650.mRNA mRNA upstream 272573 3060812 ~ 3069706 (-) True CI01000024_03060967_03068650
TU139935 other downstream 232978 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 1961163 823733 ~ 826851 (-) True G121380
TU140468 other upstream 1147803 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 4568998 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 4569466 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 4569515 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 5187428 7975667 ~ 7976047 (-) False G125798

Expression Profile