RNA id: TCONS_00016331


Basic Information

Item Value
RNA id TCONS_00016331
length 1239
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_007594
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 506778 ~ 508131 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgacAGCAGTGTGCAGAGAAGCGGCTCTACAGGCGCTGCAGGAGAGCATCTCAGCTGAACAGGTGAAGGACACACACTTCCAGAGCGCGCTGAACATCATCACACCCCGAATCCCAGAGTCCCTCCTGCAGACCTACAGCAGATACCAGCAGCagcagcgcacacacacatacacacaaccataaacacacacacacacacacaaccatcacACCCAGAATCCCAGAGTCCCTTCTGCAGACCTataaacacaccacacacacacaactacacacacaaaacacacacaaccaTCACACCCTGAATCCCAGAGTCCCTCCTGCAGACCTACAGCAGATACCAGCAGCagcagcgcacacacacatacacacaaccataaacacacacacacacacaaccatcacACACTGAATCCCAGAGTCCCTTCTGCAGACCTataaacacaccacacacacacaactacacacacaaaacacacacaaccaTCACACCCTGAATCCCAGAGTTCCTCCTGCAGACCTataaacacaccacacacacaaccacacacacacaaccatcacACCCCGAATCAGAGTCTCTACTGTAGCCctacagcagcacacacacaaatcatgAATGCACaattacacacacgcacaacgaACACACAACCATAAAAACACAACTACACACTGAGATCCATAAACACAACTACAATAGACACAACAGACTGCAGATGTCTGACtgatgtgtgtgtgacagagagtgtgtgagtgaatgagtgagtgaatgagtgtgtaaatgtgtgtttgtgtgtgtgtgtgtgtgtgtgcgcgtgcgtgcatgcgtgcgtgcatgcgtgtgtgtctttgtgtgtgcgtgtgtgtgcgtctgcgtgtgcacgtatgtgtgtgtgtgtgtgtgagatgctcAGAGACGCTCCTGCCGAGCAGCTCACAGGCCAACACACTGCGCCTGCTCTATAAACAGCAGCTTCGTTCTCCCGTTTACACTCTTCTTCCATATCAATATTTCAGACATTGTGAGATTTTGGGTCTGAATTCTGCTGATGTATAATAATGTTAGATAATGTTCAACACTTGACACCATTGCTGCATCAAACAATGGATATTTGTTCATCTGAATGTGGATTTTTCTGAAAGTCAGATGATTTTATTACATGAGTAGTGTGTATGTTTTGTAAAGGTTTGGAGTGTTTTCATGCGTCATGAGTAATAAAACATGCAAGTTTAATA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016017 lncRNA downstream 261594 244155 ~ 245184 (-) True XLOC_007588
TCONS_00016016 lncRNA downstream 282510 222965 ~ 224268 (-) False XLOC_007587
TCONS_00016015 lncRNA downstream 282510 222965 ~ 224268 (-) True XLOC_007587
TCONS_00016014 lncRNA downstream 282517 222965 ~ 224261 (-) False XLOC_007587
TCONS_00016018 lncRNA upstream 125907 634038 ~ 664120 (-) True XLOC_007597
TCONS_00014909 lncRNA upstream 354900 863031 ~ 868922 (-) False XLOC_007604
TCONS_00014914 lncRNA upstream 386541 894672 ~ 897872 (-) True XLOC_007604
TCONS_00016332 lncRNA upstream 424872 933003 ~ 939180 (-) False XLOC_007605
TCONS_00016333 lncRNA upstream 428780 936911 ~ 940031 (-) False XLOC_007605
TCONS_00014896 mRNA downstream 7799 497695 ~ 498979 (-) True XLOC_007593
TCONS_00014895 mRNA downstream 13749 484389 ~ 493029 (-) True XLOC_007592
TCONS_00014894 mRNA downstream 36273 467104 ~ 470505 (-) True XLOC_007591
TCONS_00014893 mRNA downstream 55223 356561 ~ 451555 (-) True XLOC_007590
TCONS_00014892 mRNA downstream 58596 356561 ~ 448182 (-) False XLOC_007590
TCONS_00014897 mRNA upstream 32026 540157 ~ 552036 (-) True XLOC_007595
TCONS_00014898 mRNA upstream 59085 567216 ~ 572742 (-) True XLOC_007596
TCONS_00014899 mRNA upstream 161851 669982 ~ 677801 (-) True XLOC_007598
TCONS_00014900 mRNA upstream 175816 683947 ~ 689841 (-) True XLOC_007599
TCONS_00014901 mRNA upstream 191098 699229 ~ 706345 (-) True XLOC_007600
TCONS_00014907 other upstream 328818 836949 ~ 839396 (-) False XLOC_007603
TCONS_00014910 other upstream 357494 865625 ~ 872899 (-) False XLOC_007604
TCONS_00014937 other upstream 1187593 1695724 ~ 1695842 (-) True XLOC_007622
TCONS_00014974 other upstream 1615118 2123249 ~ 2213660 (-) False XLOC_007629
TCONS_00014996 other upstream 1898814 2406945 ~ 2407048 (-) False XLOC_007639

Expression Profile

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