RNA id: TCONS_00014899


Basic Information

Item Value
RNA id TCONS_00014899
length 1437
RNA type mRNA
GC content 0.55
exon number 7
gene id XLOC_007598
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 669982 ~ 677801 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTCCAGTCTCTTCTTTGAAATATGTTTCAcctCTCACTGTGCTCAGGGTCGATTCGCACACAAGTTGTTGAACGATCTGATGGAGGATTACTCCAGCGCTCTGCGGCCGGTGGACGACACTGACAAATCCCTGAACGTCACACTGCAGGTCACACTGTCCCAGATCAAAGACATGgacgaGAGGAACCAGGTGTTAATCGCGTACCTGTGGATCAGGCAGGTGTGGCACGACGCTCACCTGAAGTGGAGTAAGGAGGATTATGACGGTCTGGAGGTGATCCGCATTCCCAGCAGCCTCATCTGGAGACCCGACCTGGTGCTGTATAACAAgGCGGATGATGATTTCTCAGGCCCGGTGGACACTAATGTCGTTCTGCGCTACACCGGCGAGATCACGTGGGACGCTCCGGCCATCACCAAGAGCTCCTGTGTGGTGGATGTTTCCTACTTTCCCTTCGACAGCCAGCAGTGCAACCTCACGTTCGGCTCCTGGACATACAACGGCAACCAGGTGGACATCGCAATGGGCAGTGTCAGCGGCGACCTCTCGGACTTCGTGGAGAACGTGGAGTGGGAATGCCACGGGATGCCGGCTACCAAAAACGTGATCATGTACGGCTGCTGCTCGGACCCGTACCCCGACATCACCTACACTGTGCTGCTGCAGCGCCGCAGCTCCTTCTACATCATCAACCTGCTGCTGCCCTGCTTCCTCATCTCCTTCCTGGCGCCGCTCAGCTTCTACCTGCCCGCAGACTCCGGGGAGAAGGTCTCGCTGGGGGTCACCGTGCTGCTGGCGCTGACTGTGTTCCAGATGATGGTGGCGGAGAGCATGCCTCCCTCTGAGAGTGTTCCTCTCATTGCTAAATACTACATAGCGACGATGACCATGATCACGGCGTCCACCGCTCTGACCATCTTCATCATGAACATTCATTTCTGCGGCGCAGAGGCCAAACCGGTGCCGTACTGGGCCAAAGTGCTCATCATCGACTACATGTCCAAGATCTTCTTCGTCTATGAGGTTGGAGAGAGCTGTGCGTCTCCGTTCGGACAGGCGGAGGAGTCAGAGTCCTTCCACAGTCAGAATCACCACCGAAAACACAAGCTTCATCACCCTAAAGGGAAAATATCAGGATCTCCGCCACCCTGCTGCCCGGAGGACCACAAATCCCCCTTCGTCCTGGGCTGCGAGAGCTGTGTTTACTGTGGTTTTCGCTCTGGAAATCTGGCCTGCGACACAAAGCTGCTCCGCAATGTTGAATACATCGCCAACTGCTTCCGCGAGCAGAAGACCACCGCCCTGAAGGTGGCCGAGTGGAAGAAAGTGGCCAAGGTGATGGACCGATTCTTCATGTGGATATTTTTCATCATGGTCTTCCTCATGAGTATCCTCATCATCGGAAAAGCACCAACAACCAACAACGACATTTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158505

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016018 lncRNA downstream 5862 634038 ~ 664120 (-) True XLOC_007597
TCONS_00016331 lncRNA downstream 161851 506778 ~ 508131 (-) True XLOC_007594
TCONS_00016330 lncRNA downstream 162178 506778 ~ 507804 (-) False XLOC_007594
TCONS_00016017 lncRNA downstream 424798 244155 ~ 245184 (-) True XLOC_007588
TCONS_00016016 lncRNA downstream 445714 222965 ~ 224268 (-) False XLOC_007587
TCONS_00014909 lncRNA upstream 185230 863031 ~ 868922 (-) False XLOC_007604
TCONS_00014914 lncRNA upstream 216871 894672 ~ 897872 (-) True XLOC_007604
TCONS_00016332 lncRNA upstream 255202 933003 ~ 939180 (-) False XLOC_007605
TCONS_00016333 lncRNA upstream 259110 936911 ~ 940031 (-) False XLOC_007605
TCONS_00016019 lncRNA upstream 325247 1003048 ~ 1003398 (-) True XLOC_007607
TCONS_00014898 mRNA downstream 97240 567216 ~ 572742 (-) True XLOC_007596
TCONS_00014897 mRNA downstream 117946 540157 ~ 552036 (-) True XLOC_007595
TCONS_00014896 mRNA downstream 171003 497695 ~ 498979 (-) True XLOC_007593
TCONS_00014895 mRNA downstream 176953 484389 ~ 493029 (-) True XLOC_007592
TCONS_00014894 mRNA downstream 199477 467104 ~ 470505 (-) True XLOC_007591
TCONS_00014900 mRNA upstream 6146 683947 ~ 689841 (-) True XLOC_007599
TCONS_00014901 mRNA upstream 21428 699229 ~ 706345 (-) True XLOC_007600
TCONS_00014902 mRNA upstream 54063 731864 ~ 733565 (-) False XLOC_007601
TCONS_00014903 mRNA upstream 54805 732606 ~ 736575 (-) True XLOC_007601
TCONS_00014904 mRNA upstream 79634 757435 ~ 763744 (-) True XLOC_007602
TCONS_00014907 other upstream 159148 836949 ~ 839396 (-) False XLOC_007603
TCONS_00014910 other upstream 187824 865625 ~ 872899 (-) False XLOC_007604
TCONS_00014937 other upstream 1017923 1695724 ~ 1695842 (-) True XLOC_007622
TCONS_00014974 other upstream 1445448 2123249 ~ 2213660 (-) False XLOC_007629
TCONS_00014996 other upstream 1729144 2406945 ~ 2407048 (-) False XLOC_007639

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_00557959_00566058.mRNA True 4673 mRNA 0.47 6 CI01000046 555539 ~ 566877 (-)
bowfin (Amia calva) AMCG00017827 True 1470 mRNA 0.50 5 CM030131.1 24591017 ~ 24596789 (-)