RNA id: TCONS_00016019


Basic Information

Item Value
RNA id TCONS_00016019
length 232
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_007607
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 1003048 ~ 1003398 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTAAATCATCTGCTTTGTTTTCTCTTGTGTAAATGATGAGGAAACCATGGCTTGCAGCATCAATAACTTACCCAGGATTAGCCACAAAAGCAGAAGACTTTCAACATTTACCACAAGTGTGATGGGCGTTGTTTTGTCAAGAAGTCGGCCAAGATCAGCCGCAAAAGAAGACTTCATACATCTGCAGGTACAACTAATATTGTATCTTTGCACATCAGCAAGAGATATGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016333 lncRNA downstream 63017 936911 ~ 940031 (-) False XLOC_007605
TCONS_00016332 lncRNA downstream 63868 933003 ~ 939180 (-) False XLOC_007605
TCONS_00014914 lncRNA downstream 105176 894672 ~ 897872 (-) True XLOC_007604
TCONS_00014909 lncRNA downstream 134126 863031 ~ 868922 (-) False XLOC_007604
TCONS_00016018 lncRNA downstream 338928 634038 ~ 664120 (-) True XLOC_007597
TCONS_00016334 lncRNA upstream 54946 1058344 ~ 1059534 (-) True XLOC_007608
TCONS_00016020 lncRNA upstream 803938 1807336 ~ 1839902 (-) False XLOC_007623
TCONS_00014938 lncRNA upstream 812896 1816294 ~ 1821767 (-) False XLOC_007623
TCONS_00014939 lncRNA upstream 812896 1816294 ~ 1839902 (-) True XLOC_007623
TCONS_00016021 lncRNA upstream 857960 1861358 ~ 1862009 (-) True XLOC_007624
TCONS_00014917 mRNA downstream 26136 973103 ~ 976912 (-) True XLOC_007606
TCONS_00014915 mRNA downstream 32195 937194 ~ 970853 (-) False XLOC_007605
TCONS_00014916 mRNA downstream 40877 942166 ~ 962171 (-) True XLOC_007605
TCONS_00014911 mRNA downstream 103856 872016 ~ 899192 (-) False XLOC_007604
TCONS_00014913 mRNA downstream 103878 886157 ~ 899170 (-) False XLOC_007604
TCONS_00014919 mRNA upstream 66630 1070028 ~ 1098607 (-) False XLOC_007609
TCONS_00014918 mRNA upstream 66630 1070028 ~ 1098607 (-) True XLOC_007609
TCONS_00014920 mRNA upstream 188916 1192314 ~ 1200854 (-) True XLOC_007610
TCONS_00014921 mRNA upstream 200210 1203608 ~ 1228690 (-) True XLOC_007611
TCONS_00014922 mRNA upstream 270903 1274301 ~ 1280907 (-) True XLOC_007612
TCONS_00014910 other downstream 130149 865625 ~ 872899 (-) False XLOC_007604
TCONS_00014907 other downstream 163652 836949 ~ 839396 (-) False XLOC_007603
TCONS_00014937 other upstream 692326 1695724 ~ 1695842 (-) True XLOC_007622
TCONS_00014974 other upstream 1119851 2123249 ~ 2213660 (-) False XLOC_007629
TCONS_00014996 other upstream 1403547 2406945 ~ 2407048 (-) False XLOC_007639
TCONS_00014997 other upstream 1403580 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00014998 other upstream 1403930 2407328 ~ 2407431 (-) True XLOC_007640

Expression Profile

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