RNA id: TU154507


Basic Information

Item Value
RNA id TU154507
length 200
lncRNA type intronic
GC content 0.50
exon number 1
gene id G135933
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14487925 ~ 14488124 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCATGTGTTTTGGGTTGAGATGAGGCACTGGGAATGCAGCTGATCTTGCAGTTTCAGTAAGTCTATCTGGATGGATAAGAGTGGCCTTCAGACCCTTGATGAAAGCCATCCCATCATCCTGACATTCACTCTCAAATCACCAACTATTCTGCTGACTCCACTGAAGTGGTGACGGGGCACACCAGGGGGTCATCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154506 lncRNA upstream 3089 14484580 ~ 14484836 (+) True G135932
TU154505 lncRNA upstream 4221 14483424 ~ 14483704 (+) True G135931
TU154502 lncRNA upstream 15352 14472304 ~ 14472573 (+) True CI01000026_14473444_14517944
TU154421 lncRNA upstream 18855 14468848 ~ 14469070 (+) True G135848
TU154417 lncRNA upstream 26113 14461609 ~ 14461812 (+) True G135844
TU154557 lncRNA downstream 66772 14554896 ~ 14555102 (+) True G135978
TU154558 lncRNA downstream 67008 14555132 ~ 14555422 (+) True G135979
TU154595 lncRNA downstream 250016 14738140 ~ 14743008 (+) True G136012
TU154617 lncRNA downstream 285148 14773272 ~ 14773507 (+) True G136034
TU154619 lncRNA downstream 288563 14776687 ~ 14776962 (+) True G136036
CI01000026_14282383_14282886.mRNA mRNA upstream 204856 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14205243_14205597.mRNA mRNA upstream 281662 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14178928_14180619.mRNA mRNA upstream 307193 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14074647_14076746.mRNA mRNA upstream 410824 14074410 ~ 14077101 (+) True CI01000026_14074647_14076746
CI01000026_13837986_13903960.mRNA mRNA upstream 583663 13837739 ~ 13904262 (+) True CI01000026_13837986_13903960
CI01000026_14530926_14542878.mRNA mRNA downstream 40780 14528904 ~ 14543624 (+) True CI01000026_14530926_14542878
CI01000026_14579105_14590405.mRNA mRNA downstream 90981 14579105 ~ 14591232 (+) True CI01000026_14579105_14590405
CI01000026_14607563_14660403.mRNA mRNA downstream 119439 14607563 ~ 14660403 (+) True CI01000026_14607563_14660403
CI01000026_14677273_14679619.mRNA mRNA downstream 188827 14676951 ~ 14679772 (+) True CI01000026_14677273_14679619
CI01000026_14685877_14686783.mRNA mRNA downstream 197722 14685846 ~ 14687092 (+) True CI01000026_14685877_14686783
TU151829 other upstream 3011018 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 3232852 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 3408845 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 4325964 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4918765 9568739 ~ 9569160 (+) False G132667

Expression Profile