RNA id: TU154558


Basic Information

Item Value
RNA id TU154558
length 291
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G135979
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14555132 ~ 14555422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTAATTCATCCCAAAGGTGTTCTATCGGGTTGAGGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATTGTCCAAAATGTTTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAACCCCTGAAAAACAACCCCACATCATAATCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154557 lncRNA upstream 30 14554896 ~ 14555102 (+) True G135978
TU154507 lncRNA upstream 67008 14487925 ~ 14488124 (+) True G135933
TU154506 lncRNA upstream 70296 14484580 ~ 14484836 (+) True G135932
TU154505 lncRNA upstream 71428 14483424 ~ 14483704 (+) True G135931
TU154502 lncRNA upstream 82559 14472304 ~ 14472573 (+) True CI01000026_14473444_14517944
TU154595 lncRNA downstream 182718 14738140 ~ 14743008 (+) True G136012
TU154617 lncRNA downstream 217850 14773272 ~ 14773507 (+) True G136034
TU154619 lncRNA downstream 221265 14776687 ~ 14776962 (+) True G136036
TU154620 lncRNA downstream 221823 14777245 ~ 14777525 (+) True G136037
TU154621 lncRNA downstream 222204 14777626 ~ 14777974 (+) True G136038
CI01000026_14530926_14542878.mRNA mRNA upstream 11508 14528904 ~ 14543624 (+) True CI01000026_14530926_14542878
CI01000026_14473444_14517944.mRNA mRNA upstream 37000 14471557 ~ 14518132 (+) False CI01000026_14473444_14517944
CI01000026_14282383_14282886.mRNA mRNA upstream 272063 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14205243_14205597.mRNA mRNA upstream 348869 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14178928_14180619.mRNA mRNA upstream 374400 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14579105_14590405.mRNA mRNA downstream 23683 14579105 ~ 14591232 (+) True CI01000026_14579105_14590405
CI01000026_14607563_14660403.mRNA mRNA downstream 52141 14607563 ~ 14660403 (+) True CI01000026_14607563_14660403
CI01000026_14677273_14679619.mRNA mRNA downstream 121529 14676951 ~ 14679772 (+) True CI01000026_14677273_14679619
CI01000026_14685877_14686783.mRNA mRNA downstream 130424 14685846 ~ 14687092 (+) True CI01000026_14685877_14686783
CI01000026_14690064_14690693.mRNA mRNA downstream 134642 14690064 ~ 14690693 (+) True CI01000026_14690064_14690693
TU151829 other upstream 3078225 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 3300059 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 3476052 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 4393171 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4985972 9568739 ~ 9569160 (+) False G132667

Expression Profile