RNA id: CI01000026_14690064_14690693.mRNA


Basic Information

Item Value
RNA id CI01000026_14690064_14690693.mRNA
length 367
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000026_14690064_14690693
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14690064 ~ 14690693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTGTCGTTCATCAGCTTTGTGTGTTTTGCCGCTTCAACAGCCGCTGCCTTCATCACAGCTCCCTTCGTTGAGTTCTTGGCAGCTCTCTTCCTGCTGTTTGCTTATTCTACAAAGTTCAATGAGAGATTTAAGGGCTTTCACTGGCCCCTCATGGACTTCCTGCGCTGTGTCAGCGCCTCCATCATCTTTTTCATCGTCTCTATAATATCTGTGTCAAAATATCCGGATGGAGCCTCAAAGGCTGCTGGGGTCTTTGGCTTCTGTGCCACCATAGTCTTTGCCCTGGACTTTTATTTCATCTTTAATGAACTGGCCAATTTCCTCAAGAGAGGTGACTCCAGTGAAGAACCACCAAACACACAAG

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154558 lncRNA upstream 134642 14555132 ~ 14555422 (+) True G135979
TU154557 lncRNA upstream 134962 14554896 ~ 14555102 (+) True G135978
TU154507 lncRNA upstream 201940 14487925 ~ 14488124 (+) True G135933
TU154506 lncRNA upstream 205228 14484580 ~ 14484836 (+) True G135932
TU154505 lncRNA upstream 206360 14483424 ~ 14483704 (+) True G135931
TU154595 lncRNA downstream 47447 14738140 ~ 14743008 (+) True G136012
TU154617 lncRNA downstream 82579 14773272 ~ 14773507 (+) True G136034
TU154619 lncRNA downstream 85994 14776687 ~ 14776962 (+) True G136036
TU154620 lncRNA downstream 86552 14777245 ~ 14777525 (+) True G136037
TU154621 lncRNA downstream 86933 14777626 ~ 14777974 (+) True G136038
CI01000026_14685877_14686783.mRNA mRNA upstream 2972 14685846 ~ 14687092 (+) True CI01000026_14685877_14686783
CI01000026_14677273_14679619.mRNA mRNA upstream 10292 14676951 ~ 14679772 (+) True CI01000026_14677273_14679619
CI01000026_14607563_14660403.mRNA mRNA upstream 29661 14607563 ~ 14660403 (+) True CI01000026_14607563_14660403
CI01000026_14579105_14590405.mRNA mRNA upstream 98832 14579105 ~ 14591232 (+) True CI01000026_14579105_14590405
CI01000026_14530926_14542878.mRNA mRNA upstream 146440 14528904 ~ 14543624 (+) True CI01000026_14530926_14542878
CI01000026_14747237_14750435.mRNA mRNA downstream 56544 14747237 ~ 14750497 (+) True CI01000026_14747237_14750435
CI01000026_14794982_14800669.mRNA mRNA downstream 104289 14794982 ~ 14801389 (+) True CI01000026_14794982_14800669
CI01000026_15144573_15146721.mRNA mRNA downstream 451893 15142586 ~ 15146823 (+) True CI01000026_15144573_15146721
CI01000026_15428529_15431580.mRNA mRNA downstream 737836 15428529 ~ 15432015 (+) True CI01000026_15428529_15431580
CI01000026_15434996_15435874.mRNA mRNA downstream 743755 15434448 ~ 15436124 (+) True CI01000026_15434996_15435874
TU151829 other upstream 3213157 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 3434991 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 3610984 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 4528103 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 5120904 9568739 ~ 9569160 (+) False G132667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066557 False 1705 mRNA 0.41 5 NC_007118.7 44608224 ~ 44621281 (+)