RNA id: CI01000026_13837986_13903960.mRNA


Basic Information

Item Value
RNA id CI01000026_13837986_13903960.mRNA
length 2247
RNA type mRNA
GC content 0.43
exon number 10
gene id CI01000026_13837986_13903960
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13837739 ~ 13904262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATATAGAGACTCGGCGAGCAAAGGCGATGCTTGAACCACTGGCAAATTTCAGCACCACCATAAGTGGACAGCTCCTCGCCAAAAAAAAAAAAAAAAAGTCGCTTATTATTTATGGTCCATTTCTGGCTCTTTCGAATAAGTAAGAACAGCAGGATTTCGATACTGAAAAGCAGAAAATATACTCTAGAAGCAGTAGAGCACTGCAAAACATACATGGCACGGCGAGTTGACCAAGTTGATAAACCATGACGTTCACAGACCACGTTCTTCTGCAAAGTGAACAATTAATTCGATGTACGACATTCCTGAACGATGCAAAACAAATGATGGACAACGGGTATTTATGGTCTGGTCTGCAGGCTGTCAATCTGTCTCGCTCTCGGATCAATCACTGTAGCGCAAACAGCATCAAACGAAACATCCAGTATTTCAGTCGAGCAAAAATGCACGCGCATCCCGCCAAACGACATATATTGTGTGATACCTCTCCTGCGCATGTTAATAAGTCTTTAATACTTACTGTTTATCATCCGGACGGTGTCGGTGAGCTCCGGCAAGCCCGCTCGCTGAGTGGAGGAGTGAGGAGAGATGGACGAGAGGTGTTTGGTGGGAAGAGCCTCCCCTTTGTCGCGCTCATTGGGCTGATAAAGAGGCAGGTCCTCAGCCCTGGCAATGAATGCACGTGCCCTACCCTGGGAATACTGAACTTTTATGTCAGTACGTTGGTGTTTTTCCCTACCTTTATCAAACGCTTTCTGCTAACGAAGCATCTTGACACTTGTGCGACGGTCCTCAGTTCTGCTGCGCAGTTTGTCAAGCCGCTCTCCAGTGGTTCTTTCTCTCTGTCATTGATTAATTCCACTGACACAGCCTTTACCGGTGATCAAAATATCAGACGTCTTCTGAAAAAGGCAAACTCTGTCACTCATTCAATATTCCACCTTTTTCTAAACCTCATCCCTGTCATGTCACCTCCCCCAGCACCCGTTTTGCACATTCGCTCAGTGTTAAAAGGAATCAGCACTGGAGTGTGGTGGGGTGATGATGCCCTAATGAAGATGAATATTCAGCTTGAGAAAGGTTCCTGGAATGATTCCCAGCTTGTGCCTGCTGTCCCACTCAAACTGCCAGCACGTATGTTCAAAAGTTTTAACACTTCTTATTTATTGGCATATACAAGAAAAGTGATGCTCAATATGCTAGAGAAGTCAAATATAGTGACAGTACTTATGGACCACATGCTCTATGATCCTCTGCGAAGCGACTTCCACGCTGTGGCTAATGGATTCACGAAAAGCCACACGCTAAGGATTAAGAGAGGCGAGGACTTTGAAGATTGGACCAAGTGTAAAGAAAGGTTGGACTACCTGCGAAGAAAGTACCGTGATAGCCTCAAAAACAACAATAAGACCGGAAGAGACCCTATTAAATGTCCTTGTTTTGATAAACTGGACGCTGTTCTCGCAGGTTCGTCTCAGAGCCCTGAGGATCACAACACCTCGAGGGAAAATGATGCAGAGGATGAGGCATCTCAGCCTCCAAAGCACCCCCACCTCCTCCTCCTGCTGCTGAACCCAAGGCACAAGTTTGGGTATGAGCTTCCAAGGCTTCTCTGCACTTTACTGATTTTTGTGGATATGAGTTACCAAGGCCTCCCGGATGTGCTCTGCTGGGGAGAGAGCAGGTGCATCATGCTGCTGTGGTCCTGCCTCTGGCTGATCCAACACATTTTCCTGGGGTTCCTGAGGTATTGGATCCAACATGTTGGTAGTTTGGGGGTTGATGTATGGTTGCAGCTGGTCACAAAGGATATTGAAGGCCTCTTTGGGCATTCTGAAGTTGAGGTACCAATCATTCTCTTAAATTCTGGAGCACCTCTTTTTCCCAGAAGGAAGGGCCTCACTCCTGTGGTGTTCTCTCATTGTACCATGAATTTGCTATAAGAGAGAGAAGGCAGTTAGTACACAATGTCAGTTTACAGTGTTTATATTCAACACAGATGTTCAAATAATTAAAATTAGGGGAAGGCCTACATTTTATGCAAATAGTTTTCTGTAGTTTAGGTACTTAAATTTGTAATTTTAATATATATGTATATATATGTATGTATGTATGTATGTGTGTATATATATGTATGTATATATTAAATTATTTTTTTATTTATTTTTTGTTTTTATATAGGTTATTATCATTAAAATGTTCCATTATTAGGTATAGTCATAATAGATAAACAAAAATACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153848 lncRNA upstream 61918 13775388 ~ 13775821 (+) True G135305
TU153838 lncRNA upstream 96034 13741466 ~ 13741705 (+) True G135295
TU153837 lncRNA upstream 96445 13741076 ~ 13741294 (+) True G135294
TU153832 lncRNA upstream 98055 13739467 ~ 13739684 (+) True G135289
TU153825 lncRNA upstream 108897 13728388 ~ 13728842 (+) True G135282
TU153946 lncRNA downstream 13096 13917358 ~ 13917571 (+) True G135390
TU153955 lncRNA downstream 60975 13965237 ~ 13965475 (+) True G135399
TU154021 lncRNA downstream 85219 13989481 ~ 13989758 (+) True G135462
TU154127 lncRNA downstream 243910 14148172 ~ 14148377 (+) True G135562
TU154129 lncRNA downstream 248997 14153259 ~ 14153526 (+) True G135564
CI01000026_13705684_13706187.mRNA mRNA upstream 131177 13704984 ~ 13706562 (+) True CI01000026_13705684_13706187
CI01000026_13356327_13411385.mRNA mRNA upstream 426005 13356327 ~ 13411734 (+) True CI01000026_13356327_13411385
CI01000026_13318769_13335447.mRNA mRNA upstream 501214 13318083 ~ 13336525 (+) True CI01000026_13318769_13335447
CI01000026_13218786_13290069.mRNA mRNA upstream 547585 13218786 ~ 13290154 (+) True CI01000026_13218786_13290069
CI01000026_13019100_13028307.mRNA mRNA upstream 808371 13018120 ~ 13029368 (+) True CI01000026_13019100_13028307
CI01000026_14074647_14076746.mRNA mRNA downstream 170148 14074410 ~ 14077101 (+) True CI01000026_14074647_14076746
CI01000026_14178928_14180619.mRNA mRNA downstream 273988 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14205243_14205597.mRNA mRNA downstream 298174 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14282383_14282886.mRNA mRNA downstream 377883 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14473444_14517944.mRNA mRNA downstream 567295 14471557 ~ 14518132 (+) False CI01000026_14473444_14517944
TU151829 other upstream 2360832 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 2582666 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 2758659 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 3675778 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4268579 9568739 ~ 9569160 (+) False G132667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068076 False 716 lncRNA 0.46 3 NC_007118.7 43333712 ~ 43387738 (-)